Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 0.0e+00 2050.8 1015 100.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 0.0e+00 1634.4 1020 79.8
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 1628.2 1017 79.4
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 0.0e+00 1619.4 1020 79.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 0.0e+00 1619.4 1020 78.9
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1587.0 1021 78.3
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 0.0e+00 1541.2 1011 75.8
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 0.0e+00 1498.8 1019 73.3
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 0.0e+00 1488.4 1015 73.6
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 0.0e+00 1163.3 839 70.6
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1078.2 988 54.1
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 6.9e-312 1074.3 1054 52.6
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 2.3e-305 1052.4 1018 52.0
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 5.6e-296 1021.1 1005 51.4
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 2.8e-295 1018.8 1020 51.1
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 7.1e-291 1004.2 1010 50.2
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.0e-289 1000.3 1029 50.2
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 5.6e-288 994.6 1022 49.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.4e-286 989.2 1022 49.8
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 3.4e-285 985.3 1000 49.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.9e-284 982.2 1004 50.1
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.0e-281 973.8 1022 49.1
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.2e-274 950.3 1017 50.1
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 3.0e-273 945.7 977 50.1
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.3e-271 940.3 1012 47.9
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.8e-270 936.4 1008 48.7
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 3.1e-270 935.6 1016 48.9
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.4e-267 926.8 977 49.4
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 2.5e-267 926.0 1002 48.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 5.7e-264 914.8 1018 48.9
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.0e-261 906.4 1004 47.0
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.9e-260 902.5 1030 47.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 3.0e-257 892.5 985 48.1
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 2.6e-253 879.4 1004 46.4
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 3.4e-248 862.4 1022 45.7
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.4e-246 856.3 1007 45.1
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 7.0e-246 854.7 1015 44.6
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.0e-244 850.9 838 51.2
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 8.8e-241 837.8 997 44.8
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.0e-240 836.6 1021 44.8
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.8e-238 830.1 1019 43.4
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 7.0e-238 828.2 996 43.3
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 9.1e-238 827.8 1024 44.0
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 3.8e-236 822.4 997 43.3
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.5e-235 819.7 1003 43.6
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 3.3e-235 819.3 1004 44.5
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 7.2e-235 818.1 1021 44.1
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.6e-234 817.0 921 46.0
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.8e-231 806.2 1002 42.9
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 2.5e-227 793.1 1000 43.8
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.8e-226 789.6 977 44.8
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 8.0e-226 788.1 998 42.4
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 4.0e-225 785.8 997 42.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 4.0e-225 785.8 998 42.3
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.2e-224 784.3 1000 42.5
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.4e-222 777.3 1021 41.1
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 9.2e-222 774.6 1011 42.7
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 8.6e-220 768.1 932 44.3
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.1e-219 767.7 1023 41.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 9.2e-214 748.0 1029 40.6
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 6.0e-213 745.3 742 49.2
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 3.3e-211 739.6 967 42.9
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.2e-210 737.6 1005 41.8
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 8.9e-209 731.5 1014 41.0
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 3.7e-207 726.1 998 41.0
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.1e-206 724.5 1015 41.8
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 6.6e-204 715.3 1138 39.2
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.8e-202 709.9 812 46.1
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 9.9e-200 701.4 1029 41.2
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.3e-199 701.0 1021 41.1
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.7e-199 700.7 996 39.9
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.0e-197 692.2 932 41.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.4e-190 671.0 999 38.2
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 9.3e-182 641.7 995 36.7
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 1.6e-178 630.9 1005 37.3
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 5.3e-177 625.9 1006 38.4
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 9.0e-177 625.2 749 43.9
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.3e-175 621.3 747 43.2
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 7.4e-171 605.5 851 39.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.8e-170 603.6 827 42.0
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.5e-166 590.5 870 37.8
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 7.9e-165 585.5 717 43.2
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 5.7e-163 579.3 711 42.3
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.8e-161 574.3 1087 35.7
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.1e-157 559.3 567 49.0
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 3.4e-152 543.5 796 39.3
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 3.0e-140 503.8 575 44.7
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.7e-135 488.0 1015 31.9
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.7e-122 443.7 422 51.9
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 6.1e-117 426.4 750 36.8
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.5e-110 404.4 871 32.0
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 7.8e-96 356.3 439 45.3
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.6e-91 339.7 470 44.7
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.5e-83 315.5 378 45.8
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 4.8e-77 293.9 934 26.2
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 6.2e-77 293.5 1009 25.8
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 2.9e-74 284.6 1047 24.7
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.4e-68 265.8 200 57.5
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 7.4e-62 243.4 140 80.7
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.8e-61 240.7 521 34.0
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 6.2e-61 240.4 184 64.1
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.6e-59 235.0 232 54.3
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.2e-57 227.6 200 52.0
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.2e-57 227.6 297 38.7
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.1e-52 213.0 282 42.2
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.1e-49 203.0 148 75.7
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 4.2e-49 201.1 148 75.0
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 7.2e-49 200.3 138 64.5
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 9.3e-49 199.9 404 34.4
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 8.7e-47 193.4 233 43.8
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 3.7e-45 188.0 442 29.2
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 4.4e-38 164.5 227 41.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.3e-36 157.5 195 47.7
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.0e-35 155.6 178 44.9
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 2.3e-31 142.1 173 53.2
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 4.4e-30 137.9 76 77.6
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.4e-28 132.1 134 46.3
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 3.1e-28 131.7 121 52.9
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 6.1e-24 117.5 127 52.8
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 4.8e-21 107.8 260 28.1
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.1e-20 106.7 155 38.7
Glyma.13G099100 Glycine max HOM05D005971 ORTHO05D007459 1.1e-20 106.7 65 83.1
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 7.0e-20 104.0 68 75.0
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 8.0e-16 90.5 66 59.1
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 1.0e-15 90.1 66 59.1
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.1e-12 78.2 106 34.9
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 1.2e-11 76.6 69 65.2
Medtr2g073720 Medicago truncatula HOM05D005971 ORTHO05D007459 1.7e-10 72.8 76 57.9
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 4.2e-09 68.2 155 30.3
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.2e-08 66.6 99 39.4
Medtr2g082550 Medicago truncatula HOM05D000001 ORTHO05D010372 2.1e-08 65.9 47 63.8
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 8.8e-07 60.5 45 53.3


User provided reference genes

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