Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007249 Lotus japonicus HOM05D003564 ORTHO05D236761 2.9e-23 110.9 51 100.0
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 3.4e-08 60.8 41 70.7
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 4.4e-08 60.5 41 68.3
arahy.Tifrunner.gnm1.ann1.8E1ZVU Arachis hypogaea HOM05D000338 ORTHO05D001259 1.7e-07 58.5 43 60.5
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.7e-07 58.5 41 68.3
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.7e-07 58.5 41 68.3
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 2.9e-07 57.8 41 68.3
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 2.9e-07 57.8 41 68.3
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 2.9e-07 57.8 41 68.3
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 3.8e-07 57.4 41 63.4
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 6.4e-07 56.6 41 65.9
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 6.4e-07 56.6 41 65.9
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 6.4e-07 56.6 41 65.9
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 8.4e-07 56.2 41 65.9
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 8.4e-07 56.2 41 65.9
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 1.1e-06 55.8 41 65.9
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 1.9e-06 55.1 41 61.0
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.9e-06 55.1 47 57.4
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.9e-06 55.1 41 61.0
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 1.9e-06 55.1 41 61.0
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.9e-06 55.1 41 61.0
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 1.9e-06 55.1 41 61.0
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 2.4e-06 54.7 42 59.5
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 2.4e-06 54.7 41 61.0
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 2.4e-06 54.7 41 63.4
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 3.2e-06 54.3 41 58.5
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 3.2e-06 54.3 41 63.4
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 3.2e-06 54.3 41 63.4
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 3.2e-06 54.3 41 61.0
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 4.2e-06 53.9 41 61.0
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 4.2e-06 53.9 41 58.5
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 4.2e-06 53.9 41 58.5
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 4.2e-06 53.9 41 61.0
CAN.G170.129 Capsicum annuum HOM05D000030 ORTHO05D000031 5.4e-06 53.5 29 72.4
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 5.4e-06 53.5 41 63.4
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.4e-06 53.5 41 58.5
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 7.1e-06 53.1 41 58.5
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 7.1e-06 53.1 41 58.5
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 7.1e-06 53.1 41 58.5
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 9.3e-06 52.8 42 54.8
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 9.3e-06 52.8 33 66.7
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 9.3e-06 52.8 41 61.0


User provided reference genes

Program Settings