Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 4.2e-300 1034.2 572 100.0
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 1.1e-156 557.8 559 61.9
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 4.4e-156 555.8 562 61.2
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 1.2e-142 511.1 500 61.8
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 8.3e-131 471.9 552 55.4
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 2.9e-123 446.8 478 57.9
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 6.8e-109 399.1 546 52.0
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 8.9e-109 398.7 529 52.4
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.5e-95 354.8 544 48.0
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 6.7e-80 302.8 545 44.4
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 7.4e-55 219.5 557 37.0
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.6e-52 211.1 555 35.5
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 1.4e-50 205.3 561 34.9
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.9e-50 204.9 550 34.4
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 1.0e-48 199.1 605 34.4
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 3.0e-48 197.6 586 35.5
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 8.8e-48 196.1 551 35.4
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.5e-47 195.3 605 34.2
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 2.0e-47 194.9 565 35.0
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 3.3e-47 194.1 565 35.4
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 3.7e-46 190.7 585 33.3
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 8.2e-46 189.5 251 50.2
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.3e-43 182.2 577 33.3
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 3.8e-43 180.6 615 32.7
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 4.7e-41 173.7 544 34.6
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.0e-40 172.6 544 34.6
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 6.7e-40 169.9 567 32.8
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.3e-38 165.6 572 32.7
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.7e-38 164.1 572 32.9
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 8.2e-38 162.9 566 32.3
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 2.4e-37 161.4 568 32.7
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 2.4e-37 161.4 565 33.5
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 4.1e-37 160.6 568 32.6
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 5.3e-37 160.2 576 32.6
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.0e-37 159.8 569 33.2
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 5.0e-35 153.7 466 33.7
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 3.2e-34 151.0 555 30.5
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 9.4e-34 149.4 572 32.0
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.1e-33 148.3 477 33.8
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 2.7e-33 147.9 549 33.5
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.2e-31 142.5 559 31.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 1.5e-31 142.1 566 30.9
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 5.7e-31 140.2 456 33.1
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 7.5e-31 139.8 514 32.5
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 2.4e-29 134.8 567 30.0
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 9.1e-29 132.9 559 31.3
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 2.2e-27 128.3 569 32.0
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 9.4e-26 122.9 551 30.3
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 1.2e-25 122.5 561 30.1
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 1.2e-23 115.9 581 29.8
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 5.7e-23 113.6 539 28.6
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 2.2e-22 111.7 497 30.0
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.8e-22 110.5 546 29.5
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 1.8e-21 108.6 630 28.7
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 5.4e-21 107.1 578 27.5
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.6e-20 105.5 519 30.8
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 2.0e-20 105.1 497 29.2
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 3.5e-20 104.4 513 29.8
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 5.9e-20 103.6 550 28.7
Psat0s5292g0040 Pisum sativum HOM05D001175 ORTHO05D001594 2.9e-19 101.3 95 58.9
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 5.0e-19 100.5 543 30.4
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 5.0e-19 100.5 579 28.5
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 1.5e-18 99.0 62 83.9
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 4.2e-18 97.4 548 29.2
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 8.0e-17 93.2 555 26.5
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 8.0e-17 93.2 561 27.1
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 3.0e-16 91.3 579 28.2
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 5.2e-16 90.5 522 27.2
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.5e-15 89.0 495 29.7
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 2.6e-15 88.2 555 27.4
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 3.4e-15 87.8 555 29.5
TPR.G16985 Trifolium pratense HOM05D007892 ORTHO05D009211 1.8e-13 82.0 98 57.1
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 3.1e-13 81.3 352 30.4
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 2.7e-12 78.2 529 26.5
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 4.5e-12 77.4 532 27.3
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 2.3e-11 75.1 62 66.1
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 3.9e-11 74.3 171 35.1
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 3.9e-11 74.3 614 23.9
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 1.1e-10 72.8 128 43.8
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 1.5e-10 72.4 74 55.4
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 1.5e-10 72.4 85 51.8
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.5e-10 71.6 546 27.1
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 9.5e-10 69.7 408 27.5
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 9.5e-10 69.7 394 26.1
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 2.8e-09 68.2 395 26.8
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 3.6e-09 67.8 395 26.8
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 1.8e-08 65.5 394 25.9
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 3.1e-08 64.7 530 27.2
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 4.0e-08 64.3 509 26.7
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 8.9e-08 63.2 532 25.9
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 2.6e-07 61.6 343 25.9
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 5.8e-07 60.5 343 28.0


User provided reference genes

Program Settings