Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0006670 Lotus japonicus HOM05D000003 ORTHO05D000022 1.3e-51 206.1 101 100.0
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 4.7e-09 64.7 64 46.9
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-09 63.9 96 40.6
Cpa.g.sc0.187 Carica papaya HOM05D010740 ORTHO05D010953 1.0e-08 63.5 63 47.6
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 1.0e-08 63.5 60 53.3
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 2.3e-08 62.4 63 44.4
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-08 61.2 58 50.0
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-08 60.8 64 45.3
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 6.7e-08 60.8 61 45.9
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 8.8e-08 60.5 66 47.0
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.1 59 44.1
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 59.7 59 52.5
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 59.7 66 45.5
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.0e-07 59.3 66 43.9
Prupe.1G446500 Prunus persica HOM05D000003 ORTHO05D000022 2.0e-07 59.3 62 43.5
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 58.9 62 45.2
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 62 48.4
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-07 58.9 68 48.5
Lj1g0006975 Lotus japonicus HOM05D000100 ORTHO05D000052 2.6e-07 58.9 59 47.5
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 58.5 60 45.0
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-07 58.5 86 38.4
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-07 58.5 59 42.4
COL.COLO4_12315 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.3e-07 58.5 65 44.6
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-07 58.2 56 50.0
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-07 58.2 66 43.9
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-07 58.2 74 44.6
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 4.4e-07 58.2 64 50.0
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 4.4e-07 58.2 64 39.1
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 4.4e-07 58.2 59 44.1
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-07 57.8 63 44.4
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-07 57.8 60 48.3
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 5.7e-07 57.8 64 45.3
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 5.7e-07 57.8 67 41.8
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 7.5e-07 57.4 59 50.8
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 7.5e-07 57.4 71 40.8
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 7.5e-07 57.4 59 45.8
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 7.5e-07 57.4 64 45.3
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 7.5e-07 57.4 60 46.7
THA.LOC104804652 Tarenaya hassleriana HOM05D000003 ORTHO05D000022 7.5e-07 57.4 65 40.0
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 7.5e-07 57.4 61 44.3
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 9.7e-07 57.0 71 38.0
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 56.6 64 45.3
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 56.6 60 43.3
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-06 56.6 59 50.8
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 1.3e-06 56.6 64 43.8
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 1.3e-06 56.6 64 43.8
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 56.2 64 42.2
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 56.2 60 48.3
Atru.chr3.2588 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 56.2 57 45.6
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 59 44.1
Cpa.g.sc51.27 Carica papaya HOM05D016823 ORTHO05D043531 1.7e-06 56.2 64 45.3
COL.COLO4_36955 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.7e-06 56.2 68 39.7
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 1.7e-06 56.2 64 40.6
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 1.7e-06 56.2 64 45.3
RcHm_v2.0_Chr1g0322281 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-06 56.2 60 45.0
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 1.7e-06 56.2 65 47.7
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 55.8 62 45.2
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 55.8 59 42.4
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 2.2e-06 55.8 60 41.7
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-06 55.5 60 41.7
Cpa.g.sc0.199 Carica papaya HOM05D010740 ORTHO05D000022 2.8e-06 55.5 63 44.4
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 3.7e-06 55.1 60 46.7
RcHm_v2.0_Chr1g0334981 Rosa chinensis HOM05D000003 ORTHO05D000022 3.7e-06 55.1 59 49.2
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 3.7e-06 55.1 64 42.2
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-06 54.7 62 48.4
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-06 54.7 62 45.2
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-06 54.7 63 42.9
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 4.8e-06 54.7 60 43.3
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 4.8e-06 54.7 60 45.0
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-06 54.3 59 37.3
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-06 54.3 62 45.2
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-06 54.3 59 45.8
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 6.3e-06 54.3 59 40.7
RcHm_v2.0_Chr3g0486471 Rosa chinensis HOM05D000003 ORTHO05D000022 6.3e-06 54.3 63 42.9
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 6.3e-06 54.3 59 44.1
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-06 53.9 59 42.4
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 8.2e-06 53.9 66 42.4
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 8.2e-06 53.9 57 43.9
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 8.2e-06 53.9 59 44.1


User provided reference genes

Program Settings