Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 4.4e-228 794.3 401 100.0
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 8.7e-184 647.1 401 82.0
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 1.9e-183 646.0 401 81.3
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 1.2e-177 626.7 401 80.8
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 1.2e-177 626.7 401 79.1
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 3.6e-177 625.2 401 78.3
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 3.0e-176 622.1 403 78.7
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 1.3e-171 606.7 401 77.1
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 1.1e-167 593.6 422 72.3
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 4.4e-151 538.5 401 67.8
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 3.1e-149 532.3 402 69.7
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 8.5e-147 524.2 402 65.9
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 9.4e-146 520.8 402 67.7
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 1.0e-144 517.3 402 67.2
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 3.1e-141 505.8 398 64.3
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 1.6e-140 503.4 405 64.7
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 4.5e-140 501.9 408 64.5
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 5.9e-140 501.5 402 61.4
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 5.9e-140 501.5 401 66.8
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 5.9e-140 501.5 407 64.1
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 1.7e-139 500.0 402 61.2
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 5.0e-139 498.4 404 63.4
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.6e-139 498.0 396 61.9
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 6.6e-139 498.0 403 65.8
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 1.1e-138 497.3 395 62.0
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 7.3e-138 494.6 402 65.4
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 3.6e-137 492.3 399 63.4
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 4.7e-137 491.9 410 63.7
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 8.0e-137 491.1 404 60.6
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 8.9e-136 487.6 384 64.8
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.2e-135 487.3 394 61.4
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.4e-135 485.7 410 61.0
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 1.3e-134 483.8 411 62.5
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 1.7e-134 483.4 413 60.5
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.2e-134 483.0 397 61.5
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 1.8e-133 479.9 400 62.8
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 7.0e-133 478.0 368 66.3
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 1.9e-130 469.9 413 59.1
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 2.1e-129 466.5 406 61.3
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 4.7e-129 465.3 399 63.9
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 4.7e-129 465.3 406 60.3
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 8.0e-129 464.5 402 60.2
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 3.1e-128 462.6 408 58.3
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 1.5e-127 460.3 405 59.0
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 7.5e-127 458.0 364 65.1
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 9.8e-127 457.6 353 66.6
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 2.2e-126 456.4 329 69.3
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 3.7e-126 455.7 383 60.6
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 7.0e-125 451.4 395 58.7
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 9.2e-125 451.1 406 60.1
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 2.0e-124 449.9 381 61.9
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.0e-124 449.9 367 63.2
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 2.0e-124 449.9 387 61.0
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 2.7e-124 449.5 395 59.7
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 3.9e-123 445.7 350 62.9
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 3.9e-123 445.7 411 57.7
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 8.6e-123 444.5 404 57.9
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 1.5e-122 443.7 408 59.6
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 1.9e-122 443.4 380 59.7
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 1.9e-122 443.4 382 60.7
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 1.2e-121 440.7 405 56.5
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 2.1e-121 439.9 339 65.5
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 2.1e-121 439.9 339 65.5
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 2.1e-121 439.9 339 65.5
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 2.1e-121 439.9 320 68.8
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 2.1e-121 439.9 406 56.4
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 2.8e-121 439.5 339 65.8
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.6e-121 439.1 394 59.4
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 8.1e-121 438.0 406 56.4
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 1.4e-120 437.2 331 64.7
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 6.8e-120 434.9 400 59.0
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 8.9e-120 434.5 385 59.0
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 9.8e-119 431.0 419 56.3
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 1.4e-117 427.2 384 58.3
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.2e-117 426.0 394 58.6
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 2.1e-116 423.3 404 54.7
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 2.1e-116 423.3 388 54.6
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 4.6e-116 422.2 414 55.6
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 7.8e-116 421.4 414 55.3
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.1e-114 417.5 288 68.8
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 1.2e-113 414.1 380 53.7
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 8.9e-112 407.9 270 71.5
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 5.8e-111 405.2 401 56.9
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 6.4e-110 401.7 384 55.5
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 3.0e-107 392.9 287 69.0
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 6.6e-107 391.7 376 56.4
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.5e-106 390.6 323 58.2
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 7.3e-106 388.3 242 76.4
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 8.1e-105 384.8 308 61.4
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 8.1e-105 384.8 330 63.9
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 5.8e-103 378.6 245 71.8
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 6.4e-102 375.2 393 51.9
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 4.2e-101 372.5 316 55.4
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 2.1e-100 370.2 396 49.7
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 1.6e-92 344.0 215 76.3
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 7.9e-92 341.7 356 53.7
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 1.4e-77 294.3 403 44.4
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 5.5e-61 239.2 150 71.3
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 2.0e-55 220.7 300 37.3
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 1.8e-51 207.6 318 35.2
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 6.5e-46 189.1 141 61.7
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 6.5e-46 189.1 141 61.7
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 1.5e-45 188.0 297 34.7
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.2e-44 184.9 224 50.4
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 8.0e-44 182.2 270 36.7
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.5e-39 166.8 213 48.4
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 4.5e-39 166.4 119 71.4
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 4.2e-37 159.8 159 52.2
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 7.7e-31 139.0 139 54.0
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 3.2e-29 133.7 96 68.8
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 6.1e-28 129.4 278 31.3
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 5.4e-24 116.3 164 42.1
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 5.9e-15 86.3 212 26.4
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 5.8e-10 69.7 94 45.7
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 2.9e-09 67.4 92 45.7
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 4.9e-09 66.6 227 24.7


User provided reference genes

Program Settings