Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 0.0e+00 1127.1 563 100.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 4.4e-274 947.6 562 83.6
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 3.8e-270 934.5 565 82.1
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 5.6e-269 930.6 565 81.8
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 3.6e-268 927.9 569 82.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.0e-267 926.4 568 80.8
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.5e-266 922.5 565 81.4
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.9e-264 915.6 564 81.9
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.8e-259 899.0 555 81.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.3e-257 892.9 556 81.1
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 9.2e-256 886.7 549 81.1
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.2e-252 876.3 548 79.0
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.1e-244 849.0 566 74.4
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 4.0e-243 844.7 565 74.5
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 4.9e-241 837.8 571 72.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.2e-236 823.2 555 73.5
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.4e-235 818.9 569 73.1
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 3.1e-235 818.5 559 74.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 6.9e-235 817.4 553 73.2
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.2e-234 816.6 552 73.2
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 3.4e-234 815.1 548 73.9
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.4e-234 815.1 571 72.3
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.7e-233 812.8 573 71.4
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 2.9e-233 812.0 563 72.1
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.9e-233 811.2 560 71.6
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 5.4e-232 807.7 560 71.2
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.2e-231 806.6 560 71.6
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 3.5e-231 805.1 520 76.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 2.3e-230 802.4 561 71.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 3.0e-230 802.0 560 71.1
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.1e-229 800.0 535 73.3
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.9e-229 799.3 542 73.2
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 9.6e-229 797.0 560 71.4
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 9.6e-229 797.0 557 72.5
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 3.6e-228 795.0 563 71.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 6.2e-228 794.3 572 71.0
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 4.0e-227 791.6 522 73.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 6.9e-227 790.8 542 72.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 5.8e-226 787.7 533 72.8
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 5.8e-226 787.7 569 70.5
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 9.9e-226 786.9 573 70.2
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 2.4e-224 782.3 559 71.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 9.3e-224 780.4 564 70.6
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.6e-223 778.1 549 70.3
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.0e-223 777.7 543 70.7
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.9e-223 777.3 577 69.0
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 3.9e-222 775.0 559 69.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 3.9e-222 775.0 564 69.5
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 6.7e-222 774.2 568 68.1
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 9.6e-221 770.4 542 70.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 9.6e-221 770.4 529 72.2
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 2.1e-220 769.2 535 71.4
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 6.2e-220 767.7 529 71.8
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 8.1e-220 767.3 548 69.5
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.1e-219 766.9 553 68.4
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.4e-219 766.5 558 69.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.4e-219 765.8 546 70.5
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.4e-219 765.8 516 73.3
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 2.6e-218 762.3 555 69.5
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.5e-218 761.5 559 68.9
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.8e-218 761.1 530 72.8
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.8e-218 761.1 576 67.9
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 3.8e-217 758.4 505 74.3
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 6.4e-217 757.7 548 68.8
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.4e-217 757.7 503 74.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 8.4e-217 757.3 534 70.8
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 3.2e-216 755.4 511 73.8
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 3.2e-216 755.4 509 73.1
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 9.3e-216 753.8 545 69.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.2e-215 753.4 513 72.9
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 2.7e-215 752.3 531 70.6
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 4.6e-215 751.5 511 73.0
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 7.9e-215 750.7 511 72.8
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.0e-214 750.4 507 74.4
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.8e-214 749.6 524 70.8
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.9e-214 748.4 542 69.9
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 6.7e-214 747.7 552 69.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.9e-213 746.1 522 72.0
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 5.6e-213 744.6 541 69.3
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 9.6e-213 743.8 510 73.3
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.8e-212 741.5 564 66.1
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 8.2e-212 740.7 481 76.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.4e-211 740.0 563 65.7
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.3e-211 738.0 540 68.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.6e-210 735.7 585 65.0
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.3e-209 733.4 642 60.4
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.9e-209 732.3 515 70.9
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 3.9e-206 721.8 505 70.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 8.7e-206 720.7 491 71.9
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.3e-205 718.8 512 70.3
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 3.7e-204 715.3 502 69.7
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 4.8e-204 714.9 508 71.7
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 8.2e-204 714.1 443 76.5
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 4.1e-203 711.8 534 67.0
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 7.7e-202 707.6 424 78.5
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 7.7e-202 707.6 541 67.7
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 2.2e-193 679.5 555 64.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 6.1e-183 644.8 372 82.3
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.4e-179 632.9 416 74.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.0e-179 631.3 504 62.5
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 8.3e-164 581.3 384 75.3
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 9.8e-157 557.8 472 58.3
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-156 557.4 432 67.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.8e-156 556.2 381 71.9
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 4.5e-154 548.9 440 59.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.8e-146 521.5 437 57.2
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 3.4e-141 506.1 459 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 4.2e-115 419.5 491 45.4
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 8.7e-113 411.8 528 47.0
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.1e-111 407.1 493 44.6
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.2e-107 393.3 519 44.7
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 7.1e-107 392.1 523 44.4
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.3e-105 387.9 450 47.8
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 6.9e-102 375.6 483 43.3
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 2.6e-101 373.6 520 43.8
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.8e-101 372.5 533 46.0
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.3e-97 361.3 255 69.0
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.4e-96 355.5 547 42.4
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 7.9e-82 308.9 176 83.5
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.7e-79 301.2 169 87.0
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 5.9e-77 292.7 517 35.6
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 3.4e-56 223.8 205 61.0
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 5.4e-54 216.5 162 71.0
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 9.2e-38 162.5 131 62.6
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.2e-37 162.2 138 59.4
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 6.6e-36 156.4 105 78.1
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 5.8e-32 143.3 86 80.2
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 8.9e-25 119.4 141 46.1
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 3.5e-21 107.5 104 56.7
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.1e-18 96.3 58 75.9
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 6.8e-17 93.2 133 46.6
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 3.4e-16 90.9 145 41.4
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.9e-14 85.1 125 44.0
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.7e-13 81.3 145 37.9
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 3.5e-13 80.9 129 41.9
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 9.9e-08 62.8 38 78.9


User provided reference genes

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