Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.0e-203 712.2 366 100.0
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.0e-182 642.5 366 88.8
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 9.8e-182 640.2 366 88.8
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 4.8e-181 637.9 366 88.5
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.4e-180 635.6 366 88.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 4.4e-174 614.8 367 85.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 5.4e-172 607.8 364 84.9
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.0e-167 593.6 403 77.4
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 4.4e-166 588.2 344 85.8
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.5e-158 563.1 377 76.4
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.0e-154 550.4 367 77.4
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.8e-151 539.7 404 70.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.9e-149 532.3 358 76.0
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.7e-149 531.9 361 76.7
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 6.4e-149 531.2 358 74.9
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.1e-148 530.4 359 75.8
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 9.2e-148 527.3 309 87.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.2e-147 526.9 358 75.4
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 3.5e-147 525.4 416 67.3
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 7.8e-147 524.2 381 72.2
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 3.9e-146 521.9 367 71.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 7.3e-145 517.7 358 72.1
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.1e-144 516.2 361 75.1
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.4e-143 513.5 362 71.3
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.3e-143 512.7 366 71.0
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.3e-143 512.7 366 71.0
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 3.1e-143 512.3 365 70.7
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 3.1e-143 512.3 379 70.2
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.4e-142 508.8 361 73.7
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 2.2e-141 506.1 350 74.6
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 2.9e-141 505.8 367 70.8
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.9e-140 503.1 367 70.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 4.1e-140 501.9 340 75.3
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 5.4e-140 501.5 357 70.3
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 9.2e-140 500.7 367 70.0
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.6e-139 500.0 395 68.1
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.6e-139 500.0 460 59.1
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.7e-139 499.2 355 71.8
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.7e-139 499.2 360 71.7
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 3.5e-139 498.8 357 71.4
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.9e-137 493.0 360 73.3
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 9.6e-137 490.7 364 68.7
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 9.6e-137 490.7 357 71.1
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 2.4e-135 486.1 355 70.1
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.4e-135 486.1 357 68.9
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 8.9e-135 484.2 360 70.0
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.8e-134 481.5 405 63.2
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 9.9e-134 480.7 405 63.0
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.9e-133 479.2 371 67.1
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 2.9e-133 479.2 369 68.6
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.8e-133 478.8 401 63.6
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.1e-132 477.2 375 65.9
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.1e-132 477.2 402 62.9
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.1e-132 477.2 405 64.7
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.9e-132 476.5 402 62.9
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.6e-131 473.4 358 68.4
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.6e-131 471.9 413 62.0
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 6.0e-131 471.5 417 60.7
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 5.1e-130 468.4 343 69.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 6.6e-130 468.0 407 63.1
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 8.7e-130 467.6 387 64.3
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.5e-129 466.1 351 68.9
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.5e-129 466.1 356 66.3
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 7.3e-129 464.5 379 63.3
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.6e-128 462.2 400 61.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.1e-127 460.7 401 62.6
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.8e-127 459.9 337 69.4
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.8e-127 459.9 404 61.4
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 2.4e-127 459.5 413 60.5
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 4.0e-127 458.8 326 70.2
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 5.3e-127 458.4 405 61.5
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.0e-127 457.6 343 67.6
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 2.0e-126 456.4 357 65.3
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.0e-126 456.4 415 59.8
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 4.4e-126 455.3 405 61.2
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 7.6e-126 454.5 385 63.4
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 7.6e-126 454.5 407 61.7
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.7e-125 453.4 404 61.6
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.2e-125 453.0 413 59.1
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 7.1e-124 448.0 397 60.5
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 9.3e-124 447.6 422 58.3
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-123 447.2 399 59.9
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.2e-123 447.2 399 59.9
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.9e-122 442.2 343 66.8
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.9e-121 439.9 363 63.9
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 4.3e-121 438.7 320 68.1
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 5.6e-121 438.3 444 55.2
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 3.6e-120 435.6 366 62.8
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 4.0e-119 432.2 360 61.4
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 2.6e-118 429.5 365 63.3
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 3.4e-118 429.1 371 61.5
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 4.5e-118 428.7 358 64.8
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.4e-116 423.7 403 57.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 4.2e-116 422.2 367 62.4
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.0e-115 418.3 363 59.2
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.8e-114 416.8 355 63.1
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.9e-113 413.3 355 62.3
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.8e-112 409.5 343 65.0
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.8e-112 408.7 343 64.7
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 8.1e-112 407.9 358 61.5
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.1e-112 407.9 343 64.7
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.1e-111 406.0 370 60.8
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.3e-111 405.2 343 64.4
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.9e-111 404.8 343 64.4
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.3e-105 385.6 366 57.9
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 9.6e-105 384.4 298 66.8
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 9.6e-105 384.4 298 66.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.2e-101 373.2 317 57.7
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.0e-98 362.8 362 53.3
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.0e-93 347.8 270 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.5e-89 334.0 381 49.3
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.9e-84 317.0 214 75.2
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 2.7e-83 313.2 316 51.9
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.7e-80 303.9 370 50.3
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.0e-78 297.0 215 70.2
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.7e-74 282.0 215 67.9
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.7e-69 267.3 217 64.5
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 8.3e-56 221.9 390 36.4
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.6e-54 217.6 152 72.4
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 6.6e-53 212.2 255 47.5
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.1e-51 205.7 150 67.3
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.3e-48 198.0 143 72.7
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.2e-47 193.4 128 76.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.1e-42 176.8 135 60.7
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 4.0e-42 176.4 124 71.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.4e-41 173.3 115 74.8
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.8e-24 116.7 79 72.2
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 7.3e-20 102.4 72 68.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.6e-19 101.3 148 43.2
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 2.1e-14 84.3 56 75.0
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.0e-13 82.0 346 24.3
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.1e-12 78.6 65 61.5
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 2.5e-12 77.4 61 67.2
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.6e-11 74.7 73 61.6


User provided reference genes

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