Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 7.6e-155 550.4 272 100.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.9e-138 495.4 272 89.0
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.3e-134 481.9 265 89.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.2e-131 473.4 272 85.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.6e-131 472.2 273 85.3
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.5e-131 471.5 271 86.0
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.9e-130 468.8 253 89.7
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 6.0e-128 461.1 264 84.1
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.3e-125 453.4 272 81.6
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.9e-122 441.4 273 79.9
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 9.3e-121 437.2 269 78.8
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.6e-120 436.4 273 78.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.5e-118 429.9 252 84.1
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 5.7e-118 427.9 271 77.9
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 9.6e-118 427.2 267 78.7
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.6e-117 426.4 267 78.7
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 4.8e-117 424.9 260 79.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.1e-116 423.7 255 80.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.0e-115 419.5 248 81.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.5e-115 418.3 252 78.6
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 5.9e-115 417.9 263 77.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.9e-115 417.9 252 78.6
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.0e-114 417.2 263 77.9
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.7e-114 416.4 260 78.8
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.2e-114 416.0 255 81.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 2.2e-114 416.0 252 77.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 2.9e-114 415.6 252 78.2
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.9e-114 415.6 264 76.9
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 8.4e-114 414.1 271 76.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.4e-113 413.3 250 80.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.9e-113 412.9 253 79.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-113 412.5 254 78.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.2e-113 412.1 253 79.1
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 4.2e-113 411.8 268 75.7
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 5.5e-113 411.4 254 78.3
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.7e-112 409.1 253 78.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.5e-112 408.7 239 82.8
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 3.5e-112 408.7 256 77.3
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.6e-112 408.3 260 77.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.0e-111 407.1 253 78.3
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.8e-111 406.4 254 77.2
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 5.1e-111 404.8 245 79.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 4.3e-110 401.7 278 72.7
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.3e-109 400.2 256 74.6
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.3e-109 400.2 256 75.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.6e-109 399.8 252 77.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.2e-109 399.4 256 74.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.8e-109 399.1 256 75.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.7e-109 398.7 253 74.7
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 6.3e-109 397.9 253 76.7
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.4e-108 396.7 247 77.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.8e-108 396.4 317 65.6
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.2e-107 393.7 261 73.6
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.5e-107 393.3 242 78.5
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.6e-107 392.5 260 72.3
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 7.7e-107 391.0 260 72.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 7.7e-107 391.0 260 72.3
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.0e-106 390.6 253 73.5
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.3e-106 390.2 253 75.9
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.7e-106 389.8 252 73.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.7e-106 389.8 252 73.8
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.2e-106 389.4 254 74.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 3.8e-106 388.7 247 74.9
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.9e-105 386.3 288 69.4
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.9e-105 386.3 273 70.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.2e-105 385.6 262 72.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-105 385.6 247 76.9
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.2e-105 385.2 272 69.9
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.7e-104 382.5 273 68.9
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.3e-103 379.4 268 71.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 6.7e-103 377.9 248 73.4
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.1e-102 377.1 257 72.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.1e-102 377.1 257 72.0
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.5e-102 376.7 256 71.1
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.0e-102 376.3 250 72.0
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 2.0e-102 376.3 272 71.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.3e-102 375.6 248 71.8
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 4.3e-102 375.2 252 72.2
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 8.2e-101 370.9 249 71.5
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.1e-100 370.5 238 74.4
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 2.4e-100 369.4 264 71.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.0e-99 366.3 265 68.7
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 7.7e-99 364.4 264 68.9
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.2e-96 357.1 264 66.7
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.9e-95 352.1 249 68.7
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.0e-94 349.7 267 65.5
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.4e-92 343.6 201 81.1
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.4e-92 343.6 267 64.4
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.5e-90 334.3 206 78.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 3.2e-89 332.4 262 64.1
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.5e-86 323.6 253 65.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.6e-83 313.5 276 61.2
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.7e-83 312.8 252 62.7
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.8e-82 308.9 289 59.2
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.5e-82 308.1 281 60.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.2e-81 305.8 238 64.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 4.2e-81 305.4 253 63.6
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.7e-80 302.8 255 59.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.0e-79 300.8 172 82.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.0e-79 298.9 195 73.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 5.7e-78 295.0 265 59.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 6.3e-77 291.6 263 57.8
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.7e-75 286.2 272 57.4
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.2e-74 283.1 273 53.5
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 6.5e-74 281.6 256 57.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 8.8e-71 271.2 254 57.1
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.4e-70 268.9 254 56.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.5e-70 268.1 166 77.1
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.6e-64 250.4 156 75.6
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.7e-61 239.2 172 70.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.6e-56 223.8 313 43.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.4e-55 220.7 240 49.6
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.3e-49 199.1 167 64.1
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 9.5e-49 198.0 255 44.3
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.6e-48 196.1 212 50.0
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.5e-41 173.3 248 41.1
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.3e-41 171.8 118 70.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.3e-39 166.8 122 68.9
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-38 164.5 157 58.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 6.2e-32 142.1 96 71.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 4.0e-31 139.4 85 76.5
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.8e-27 125.2 76 77.6
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-24 117.5 131 49.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.7e-21 107.5 85 57.6
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.7e-21 107.5 66 78.8
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.9e-21 105.9 85 64.7
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 3.9e-18 96.3 166 36.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.7e-13 80.9 54 66.7
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 4.9e-13 79.3 68 58.8
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.9e-12 77.4 39 89.7
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-10 70.9 56 67.9
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 5.1e-10 69.3 56 62.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-08 63.5 37 81.1
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-08 63.5 37 81.1
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 9.0e-07 58.5 42 64.3


User provided reference genes

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