Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 4.8e-126 454.5 230 100.0
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.5e-71 273.5 242 63.2
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 5.2e-64 248.4 212 63.7
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 2.7e-60 236.1 241 56.8
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.6e-58 228.4 243 56.4
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.2e-55 220.7 269 50.9
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 9.8e-55 217.6 250 52.0
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.1e-53 214.2 227 57.3
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 6.6e-51 204.9 238 52.1
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 8.9e-48 194.5 239 51.0
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.0e-47 193.4 235 49.4
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.0e-47 193.4 235 49.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 1.6e-44 183.7 238 48.7
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 7.8e-44 181.4 252 47.6
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 6.6e-43 178.3 226 49.1
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 1.5e-42 177.2 240 48.3
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 2.3e-40 169.9 236 47.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 6.0e-36 155.2 237 42.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 6.0e-36 155.2 217 45.6
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 5.6e-34 148.7 250 41.2
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 3.2e-29 132.9 266 35.3
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.1e-28 130.2 279 35.1
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 2.1e-28 130.2 274 34.7
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 9.6e-26 121.3 162 44.4
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 1.3e-25 120.9 226 39.8
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 6.2e-25 118.6 272 33.8
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 8.1e-25 118.2 269 34.6
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.1e-24 117.9 268 34.7
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 9.0e-24 114.8 271 33.6
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.4e-23 112.8 273 32.6
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.4e-23 112.5 263 33.8
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.3e-22 110.9 278 31.7
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-22 110.9 273 33.0
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.2e-22 110.2 273 32.6
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 8.4e-22 108.2 273 32.6
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 8.4e-22 108.2 263 32.3
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.6e-20 104.0 252 35.7
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.1e-20 103.6 272 31.2
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.3e-19 100.9 272 33.5
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.7e-19 100.5 246 32.9
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.3e-18 96.3 282 31.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.6e-18 95.5 206 35.9
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 7.3e-18 95.1 266 32.0
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 2.1e-17 93.6 262 33.2
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 6.2e-17 92.0 211 36.0
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 4.0e-16 89.4 264 30.7
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 9.0e-16 88.2 232 33.6
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 2.6e-15 86.7 275 30.5
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.9e-15 84.7 283 27.2
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 6.4e-14 82.0 251 30.7
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 7.1e-13 78.6 94 46.8
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 7.1e-13 78.6 268 27.6
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.3e-13 78.2 217 30.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 2.7e-12 76.6 368 24.7
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 4.6e-12 75.9 271 26.9
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 4.6e-12 75.9 257 26.5
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 1.3e-11 74.3 99 43.4
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 6.7e-11 72.0 189 33.3
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 6.7e-11 72.0 294 25.5
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 8.7e-11 71.6 246 29.7
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.1e-10 71.2 92 45.7
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 1.5e-10 70.9 65 63.1
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 2.5e-10 70.1 138 34.8
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 5.6e-10 68.9 80 51.2
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 5.6e-10 68.9 80 51.2
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 7.4e-10 68.6 274 28.5
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 9.6e-10 68.2 185 31.4
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 9.6e-10 68.2 208 29.8
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.3e-09 67.8 244 29.9
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-09 67.4 244 28.7
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.1e-09 67.0 202 31.2
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 2.8e-09 66.6 127 37.0
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 3.7e-09 66.2 193 31.6
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 3.7e-09 66.2 127 37.0
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 6.2e-09 65.5 254 28.0
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 8.1e-09 65.1 156 33.3
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.4e-08 64.3 187 31.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.4e-08 64.3 186 32.3
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.4e-08 64.3 186 32.3
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 1.8e-08 63.9 203 31.0
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-08 63.5 244 27.9
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.4e-08 63.5 244 27.9
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.4e-08 63.5 244 27.9
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 3.1e-08 63.2 186 31.7
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.1e-08 63.2 192 31.2
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.0e-08 62.8 192 30.7
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 6.9e-08 62.0 259 29.3
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 9.0e-08 61.6 199 30.2
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-07 61.2 189 31.2
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-07 61.2 189 31.2
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 1.2e-07 61.2 103 36.9
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.2e-07 61.2 218 25.7
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.5e-07 60.8 185 30.3
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.5e-07 60.8 223 28.3
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.5e-07 60.8 195 31.3
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 2.6e-07 60.1 181 31.5
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 4.5e-07 59.3 258 26.7
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 5.8e-07 58.9 184 30.4
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 5.8e-07 58.9 271 27.7
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 5.8e-07 58.9 91 37.4
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 7.6e-07 58.5 191 28.8
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 1.0e-06 58.2 96 34.4
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.0e-06 58.2 192 29.2
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.7e-06 57.4 92 33.7
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-06 57.4 185 29.2
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.7e-06 57.4 191 27.2
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 2.2e-06 57.0 185 28.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.2e-06 57.0 229 24.9
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 2.2e-06 57.0 182 28.6
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 2.2e-06 57.0 92 38.0
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 2.2e-06 57.0 92 38.0
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 4.9e-06 55.8 182 28.0
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 8.4e-06 55.1 239 26.8


User provided reference genes

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