Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 5.8e-192 674.5 458 100.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 2.5e-187 659.1 462 91.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.1e-112 410.2 431 61.9
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.1e-109 400.2 441 60.5
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 9.6e-102 374.8 506 52.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.3e-95 353.6 433 53.3
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.4e-92 343.6 446 51.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.2e-88 331.3 400 54.0
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.1e-85 320.5 384 52.1
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.4e-81 307.0 403 48.4
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.4e-81 307.0 403 48.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.2e-80 304.7 373 50.9
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 4.6e-80 302.8 429 46.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.8e-79 300.8 377 48.3
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-78 297.4 441 48.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 6.2e-77 292.4 370 52.2
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-76 290.8 370 51.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.0e-75 287.3 373 49.1
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.0e-75 287.3 373 49.1
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.0e-74 285.0 419 46.8
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.1e-73 281.6 379 47.5
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 7.1e-73 278.9 454 44.9
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-70 271.6 422 42.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.7e-70 269.2 406 44.3
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 5.7e-70 269.2 375 45.9
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 9.7e-70 268.5 439 46.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.6e-67 258.8 426 45.5
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 5.0e-66 256.1 365 46.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.6e-64 251.1 354 49.4
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-62 244.6 370 45.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.7e-62 241.9 375 44.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.8e-61 240.4 372 45.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-61 240.4 367 48.0
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.1e-60 235.3 310 52.9
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 7.7e-59 232.3 406 43.8
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.0e-58 231.9 405 44.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 6.5e-58 229.2 360 50.0
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.5e-57 227.3 369 43.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.2e-56 224.9 368 41.6
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.1e-56 224.2 422 41.0
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.2e-53 214.2 401 38.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-53 213.8 403 43.4
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.8e-52 211.1 406 41.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 7.0e-52 209.1 371 40.2
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-51 208.4 480 38.1
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.4e-51 206.8 472 38.6
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.9e-51 206.1 456 35.7
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 5.9e-51 206.1 313 44.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-49 201.8 397 42.3
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-49 201.8 397 42.3
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 7.2e-49 199.1 485 34.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.2e-49 199.1 486 34.0
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.0e-47 193.7 365 39.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.0e-46 191.0 362 40.3
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.6e-46 190.7 287 50.2
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.8e-45 187.2 396 38.4
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.4e-44 184.9 436 37.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.8e-44 184.5 371 39.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.0e-43 181.0 233 48.9
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.9e-43 179.5 489 35.6
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.9e-43 179.5 419 38.4
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-42 177.6 376 38.6
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 5.0e-42 176.4 413 39.5
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 6.5e-42 176.0 275 49.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 6.5e-42 176.0 351 39.6
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.9e-41 174.5 418 39.5
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.2e-41 173.3 373 38.6
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.2e-40 171.8 389 37.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.6e-40 171.4 235 50.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-40 171.0 280 42.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.1e-40 171.0 311 45.0
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 6.1e-40 169.5 255 47.5
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 6.1e-40 169.5 299 43.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.0e-39 168.7 326 45.4
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.4e-39 168.3 424 39.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-39 167.5 274 42.7
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.8e-39 165.6 415 34.7
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 9.7e-38 162.2 430 35.3
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.7e-37 161.4 425 34.4
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 8.2e-37 159.1 439 37.6
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 8.2e-37 159.1 315 44.4
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.1e-36 158.7 393 34.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.8e-36 157.9 305 44.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.4e-36 157.5 321 42.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.4e-36 157.5 325 42.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 9.1e-36 155.6 448 33.3
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.2e-35 155.2 456 33.1
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-35 154.8 447 34.2
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.6e-35 154.8 240 45.0
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.5e-35 153.7 174 54.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 3.5e-35 153.7 272 46.7
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.3e-34 151.8 399 35.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-34 151.4 276 45.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.7e-34 151.4 321 41.7
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.2e-34 151.0 293 41.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 5.0e-34 149.8 321 41.4
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.1e-33 148.7 229 50.2
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.9e-33 147.9 274 47.4
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.9e-33 147.9 265 46.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.2e-33 146.7 292 40.1
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.4e-31 141.7 405 31.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.0e-31 140.2 211 53.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 5.2e-31 139.8 246 44.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.8e-31 139.0 231 42.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.5e-30 138.3 234 47.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-30 137.9 274 39.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.5e-30 136.0 374 33.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 3.7e-29 133.7 243 45.7
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 8.3e-29 132.5 234 46.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.3e-29 132.5 313 40.3
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.4e-28 131.7 232 48.7
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.4e-28 131.7 232 47.8
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.8e-28 131.3 276 43.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.0e-27 127.9 197 46.2
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.7e-27 127.5 232 44.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.7e-27 127.5 230 45.2
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.5e-27 126.7 234 39.3
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.0e-26 125.6 233 46.4
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.0e-26 125.6 434 36.6
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-26 125.2 299 39.8
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 5.0e-26 123.2 232 47.0
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.1e-25 122.1 409 30.8
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.3e-25 120.6 208 45.2
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-24 118.6 210 45.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.2e-24 118.6 210 45.2
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.0e-23 114.0 276 39.1
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 5.2e-23 113.2 399 34.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.2e-22 112.1 345 36.2
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.2e-22 112.1 390 29.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 3.4e-22 110.5 348 29.9
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-21 108.6 287 37.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.7e-21 107.1 315 37.8
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.3e-21 106.3 197 41.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.4e-20 103.2 192 46.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.6e-19 101.7 415 30.6
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.5e-19 100.1 206 37.4
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 7.8e-19 99.4 206 38.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 3.8e-18 97.1 430 34.2
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 8.6e-18 95.9 353 29.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.5e-17 95.1 159 45.9
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-17 94.7 216 34.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 3.3e-17 94.0 201 38.8
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-16 91.3 148 40.5
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 2.1e-16 91.3 174 44.8
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.8e-16 90.9 177 41.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.1e-16 89.7 362 26.8
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.0e-15 87.4 231 31.6
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.2e-15 86.7 306 33.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 8.9e-15 85.9 213 35.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-14 84.3 209 37.3
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.4e-14 84.0 170 40.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 7.5e-14 82.8 137 43.8
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.9e-13 80.9 182 40.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 3.2e-12 77.4 146 41.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 7.0e-12 76.3 139 51.1
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.0e-12 76.3 138 38.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.5e-11 73.9 392 28.6
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 6.0e-11 73.2 226 34.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 7.8e-11 72.8 171 35.1
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.7e-10 71.6 162 35.8
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 8.6e-10 69.3 142 39.4
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.3e-09 67.0 146 40.4
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.1e-08 64.7 236 30.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.6e-08 63.9 149 34.9
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 1.8e-07 61.6 204 31.9
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.3e-07 61.2 176 36.4
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 6.8e-07 59.7 170 36.5
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.6e-06 57.8 138 31.2
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-06 57.8 131 33.6
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.4e-06 57.4 86 45.3
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.4e-06 57.4 129 33.3
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 4.4e-06 57.0 208 29.3
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 9.8e-06 55.8 194 32.0


User provided reference genes

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