Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 9.1e-170 600.1 298 100.0
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 3.0e-136 488.8 295 82.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.9e-135 486.1 289 82.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.5e-135 483.8 272 86.0
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 8.1e-134 480.7 302 78.8
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 8.1e-134 480.7 301 80.1
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 8.1e-134 480.7 289 82.0
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.1e-133 480.3 302 78.5
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.0e-132 476.1 301 78.7
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.4e-132 474.9 292 80.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 3.5e-129 465.3 299 76.6
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.7e-128 463.0 263 84.0
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.5e-127 459.9 297 75.4
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 4.3e-127 458.4 284 79.2
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.3e-127 458.4 292 79.5
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 9.5e-127 457.2 299 74.9
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.2e-126 456.8 312 73.7
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.6e-126 456.4 284 77.8
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.1e-126 456.1 299 74.6
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.6e-126 455.3 278 79.1
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 4.7e-126 454.9 298 75.5
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 4.7e-126 454.9 276 77.5
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 8.1e-126 454.1 264 81.4
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-125 453.8 279 77.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-125 453.8 300 76.7
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 2.3e-125 452.6 290 75.9
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 4.0e-125 451.8 302 73.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 5.2e-125 451.4 272 77.6
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 5.2e-125 451.4 303 72.9
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.2e-125 451.4 299 74.6
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 6.8e-125 451.1 272 79.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 8.9e-125 450.7 289 74.7
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.9e-125 450.7 291 75.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 8.9e-125 450.7 300 75.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 8.9e-125 450.7 289 75.8
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.2e-124 450.3 297 73.7
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.5e-124 449.9 266 80.1
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.0e-124 449.5 292 75.0
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 3.4e-124 448.7 293 74.4
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 5.8e-124 448.0 270 80.0
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.3e-123 446.8 291 75.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.7e-123 446.4 300 74.0
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.2e-123 446.0 278 78.8
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.2e-123 446.0 255 81.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.2e-123 446.0 285 77.2
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 2.2e-123 446.0 309 72.2
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 3.7e-123 445.3 263 79.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 6.4e-123 444.5 298 72.5
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 8.4e-123 444.1 293 74.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.1e-122 443.7 277 76.5
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.1e-122 443.7 269 78.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.4e-122 443.4 282 77.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.4e-122 443.4 262 79.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.4e-122 442.6 301 72.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.4e-122 442.6 301 72.8
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.4e-122 442.6 310 71.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 2.4e-122 442.6 282 74.8
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 3.2e-122 442.2 299 71.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 4.1e-122 441.8 267 77.5
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 4.1e-122 441.8 304 72.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.1e-122 441.8 255 80.8
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 4.1e-122 441.8 299 71.6
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 5.4e-122 441.4 301 71.8
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 7.1e-122 441.0 254 81.9
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 7.1e-122 441.0 280 76.1
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.6e-121 439.9 301 71.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 2.1e-121 439.5 267 77.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 4.6e-121 438.3 310 71.3
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 6.0e-121 438.0 281 73.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 6.0e-121 438.0 291 73.9
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.0e-120 437.2 299 71.9
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.7e-120 436.4 301 73.1
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.3e-120 436.0 292 72.6
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.3e-120 436.0 292 72.3
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.0e-120 435.6 279 75.3
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 3.0e-120 435.6 297 72.7
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.9e-120 435.3 292 72.3
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.9e-120 435.3 301 70.8
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 8.6e-120 434.1 263 77.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 8.6e-120 434.1 251 81.3
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.5e-119 432.6 265 75.8
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 3.3e-119 432.2 298 70.5
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.3e-119 431.8 273 73.3
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.2e-118 430.3 292 71.9
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.6e-118 428.7 290 72.8
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.4e-117 426.8 254 78.7
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.2e-117 424.9 243 82.3
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.6e-116 422.5 300 72.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.4e-114 416.8 243 79.8
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.4e-114 416.8 243 79.8
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.1e-114 414.5 309 65.0
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 2.7e-113 412.5 300 68.7
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.3e-112 410.2 243 78.2
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 7.3e-111 404.4 294 67.3
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.3e-110 403.7 291 71.1
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 8.1e-102 374.4 219 80.8
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 3.1e-101 372.5 278 63.3
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 6.9e-101 371.3 269 67.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 4.2e-98 362.1 259 64.5
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 5.5e-98 361.7 277 61.4
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.1e-96 355.1 274 66.8
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.1e-95 354.0 283 66.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 4.3e-95 352.1 271 60.5
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 7.4e-95 351.3 280 58.6
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.3e-94 350.5 292 58.6
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 4.2e-90 335.5 202 80.7
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.4e-85 320.5 192 77.6
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.8e-85 320.1 190 78.9
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.0e-83 314.3 192 76.0
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 3.8e-83 312.4 192 75.5
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 6.5e-83 311.6 187 79.7
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 4.2e-82 308.9 190 75.8
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 7.2e-82 308.1 238 64.7
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.6e-81 307.0 263 57.4
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 5.1e-80 302.0 173 80.9
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.5e-79 299.7 267 56.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.9e-74 283.5 243 56.0
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 7.4e-71 271.6 211 64.9
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.0e-63 246.9 256 49.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.1e-61 239.6 173 68.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.6e-60 236.5 256 52.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.5e-58 230.7 188 61.7
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.7e-41 172.6 155 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.3e-35 154.5 274 36.5
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 4.3e-34 149.4 85 81.2
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 7.5e-23 112.1 65 78.5
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.9e-22 110.2 315 28.3
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.7e-22 109.8 274 33.9
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 7.8e-20 102.1 68 67.6
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.4e-15 86.7 104 51.0
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.8e-12 75.5 95 51.6


User provided reference genes

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