Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.8e-60 235.7 119 100.0
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.5e-38 162.9 117 72.6
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 2.5e-38 162.2 119 73.1
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.8e-36 156.0 114 71.9
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 7.1e-33 144.1 98 75.5
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 4.3e-30 134.8 115 61.7
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 6.9e-28 127.5 114 61.4
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 1.0e-26 123.6 96 68.8
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.3e-26 123.2 96 64.6
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.7e-26 122.9 100 63.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 2.2e-26 122.5 90 72.2
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 3.8e-26 121.7 90 66.7
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 5.0e-26 121.3 101 59.4
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 8.4e-26 120.6 96 62.5
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.4e-25 119.8 100 69.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.4e-25 119.8 98 67.3
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 2.5e-25 119.0 101 64.4
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 1.6e-24 116.3 105 57.1
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 4.6e-24 114.8 95 62.1
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 7.9e-24 114.0 92 62.0
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 7.9e-24 114.0 106 57.5
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-23 113.6 92 60.9
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.0e-23 113.6 92 62.0
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.8e-23 112.8 102 56.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.3e-23 112.5 92 59.8
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.3e-23 112.5 95 62.1
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.3e-23 112.5 93 59.1
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.0e-23 112.1 92 59.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 3.0e-23 112.1 99 55.6
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 5.1e-23 111.3 105 55.2
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 6.7e-23 110.9 109 51.4
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 6.7e-23 110.9 94 60.6
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 8.7e-23 110.5 89 60.7
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.1e-22 110.2 95 60.0
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.5e-22 109.8 90 61.1
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.5e-22 109.0 100 54.0
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.5e-22 109.0 94 60.6
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 3.3e-22 108.6 90 60.0
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 3.3e-22 108.6 97 55.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 3.3e-22 108.6 90 61.1
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 4.3e-22 108.2 97 58.8
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.3e-22 108.2 97 54.6
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 9.7e-22 107.1 92 56.5
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 9.7e-22 107.1 93 60.2
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 1.3e-21 106.7 92 58.7
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.3e-21 106.7 97 56.7
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.3e-21 106.7 87 63.2
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.6e-21 106.3 100 55.0
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.6e-21 106.3 96 58.3
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 2.2e-21 105.9 100 57.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 2.2e-21 105.9 93 54.8
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.8e-21 105.5 92 58.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.8e-21 105.5 97 57.7
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.8e-21 105.5 97 57.7
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 6.3e-21 104.4 92 57.6
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 6.3e-21 104.4 88 60.2
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 6.3e-21 104.4 93 54.8
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.4e-20 103.2 88 58.0
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.4e-20 103.2 93 52.7
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 4.1e-20 101.7 89 56.2
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 9.0e-20 100.5 106 49.1
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 9.0e-20 100.5 90 55.6
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.5e-19 99.8 90 56.7
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.5e-19 99.8 100 52.0
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.0e-19 99.4 93 53.8
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.6e-19 99.0 90 56.7
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 2.6e-19 99.0 92 53.3
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.5e-19 98.2 106 49.1
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.5e-19 98.2 106 49.1
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.7e-18 96.3 92 53.3
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.2e-18 95.9 92 51.1
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 6.5e-18 94.4 88 53.4
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 6.5e-18 94.4 89 53.9
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 8.5e-18 94.0 100 50.0
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 3.2e-17 92.0 85 57.6
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 4.2e-17 91.7 90 51.1
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 9.4e-17 90.5 101 43.6
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 2.7e-16 89.0 106 44.3
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-15 87.0 93 48.4
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 1.1e-14 83.6 101 42.6
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 2.5e-14 82.4 88 51.1
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.3e-14 82.0 64 68.8
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 7.4e-14 80.9 86 50.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 9.7e-14 80.5 82 56.1
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 1.7e-10 69.7 92 44.6
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.2e-08 63.5 83 43.4
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.5e-06 56.6 56 55.4
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 4.4e-06 55.1 73 42.5


User provided reference genes

Program Settings