Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 2.3e-80 302.4 174 100.0
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 1.7e-30 136.7 177 54.8
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 1.7e-30 136.7 177 55.4
VMungo1080G0594 Vigna mungo HOM05D007264 ORTHO05D008639 2.2e-30 136.3 171 56.7
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 2.8e-30 136.0 172 57.6
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 1.5e-26 123.6 172 51.7
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 1.5e-26 123.6 173 52.6
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 1.4e-24 117.1 176 51.7
Glyma.13G338500 Glycine max HOM05D007264 ORTHO05D008639 6.8e-24 114.8 178 53.4
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 7.5e-23 111.3 167 46.7
TPR.G6833 Trifolium pratense HOM05D007264 ORTHO05D008639 1.7e-22 110.2 181 52.5
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 2.4e-21 106.3 140 47.9
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 2.4e-21 106.3 157 43.9
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 4.1e-21 105.5 164 45.1
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 5.4e-21 105.1 154 44.2
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 5.4e-21 105.1 154 44.2
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 1.2e-20 104.0 165 49.1
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 2.7e-20 102.8 154 51.3
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 2.7e-20 102.8 183 43.7
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 2.7e-20 102.8 151 46.4
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 7.8e-20 101.3 167 41.3
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 1.0e-19 100.9 154 45.5
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 2.3e-19 99.8 172 44.2
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 2.3e-19 99.8 143 47.6
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 2.9e-19 99.4 175 42.9
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 3.8e-19 99.0 152 49.3
Psat5g287960 Pisum sativum HOM05D007264 ORTHO05D008639 3.8e-19 99.0 174 47.7
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 3.8e-19 99.0 167 41.9
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 3.8e-19 99.0 167 41.9
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 5.0e-19 98.6 136 47.1
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 6.6e-19 98.2 146 50.7
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 6.6e-19 98.2 154 42.9
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 8.6e-19 97.8 142 45.8
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 1.9e-18 96.7 181 40.9
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 5.6e-18 95.1 140 47.9
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 5.6e-18 95.1 160 46.2
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 7.3e-18 94.7 187 36.9
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 1.2e-17 94.0 107 52.3
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 2.1e-17 93.2 143 47.6
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 2.1e-17 93.2 143 47.6
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 2.1e-17 93.2 143 47.6
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 4.7e-17 92.0 164 44.5
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 4.7e-17 92.0 112 50.0
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 4.7e-17 92.0 167 40.7
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 8.0e-17 91.3 157 42.7
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 8.0e-17 91.3 165 41.8
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 8.0e-17 91.3 142 43.0
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 8.0e-17 91.3 174 43.7
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 8.0e-17 91.3 179 40.2
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 1.0e-16 90.9 177 41.8
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 2.3e-16 89.7 169 41.4
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 2.3e-16 89.7 99 52.5
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 2.3e-16 89.7 99 52.5
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 4.0e-16 89.0 164 41.5
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 4.0e-16 89.0 137 43.8
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 8.9e-16 87.8 144 42.4
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 1.2e-15 87.4 168 40.5
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 2.0e-15 86.7 123 45.5
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 2.6e-15 86.3 178 43.3
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 2.6e-15 86.3 155 42.6
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 2.6e-15 86.3 106 50.0
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 3.4e-15 85.9 175 44.6
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 3.4e-15 85.9 156 40.4
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 4.4e-15 85.5 181 39.2
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 5.8e-15 85.1 155 43.9
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 9.8e-15 84.3 102 45.1
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 1.7e-14 83.6 107 46.7
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 2.2e-14 83.2 79 57.0
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 2.2e-14 83.2 120 50.0
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 2.2e-14 83.2 106 47.2
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 2.9e-14 82.8 81 55.6
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 3.7e-14 82.4 167 41.3
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 3.7e-14 82.4 123 44.7
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 4.9e-14 82.0 174 40.2
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 6.4e-14 81.6 80 56.2
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 6.4e-14 81.6 80 56.2
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 6.4e-14 81.6 80 56.2
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 6.4e-14 81.6 126 45.2
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 8.3e-14 81.3 120 49.2
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 1.4e-13 80.5 81 54.3
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 3.2e-13 79.3 175 40.6
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 3.2e-13 79.3 172 43.6
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 5.4e-13 78.6 149 40.3
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 1.2e-12 77.4 173 35.3
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 2.7e-12 76.3 173 35.3
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 2.7e-12 76.3 165 42.4
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 7.8e-12 74.7 171 39.2
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 1.0e-11 74.3 71 56.3
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 1.3e-11 73.9 70 54.3
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 2.3e-11 73.2 137 40.1
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 3.9e-11 72.4 108 42.6
Ca_01307_v3 Cicer arietinum L. HOM05D007264 ORTHO05D008639 3.9e-11 72.4 116 51.7
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 3.9e-11 72.4 107 44.9
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 8.6e-11 71.2 174 38.5
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 2.5e-10 69.7 190 33.7
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 6.2e-09 65.1 154 41.6
unitig_899.g15261 Utricularia gibba HOM05D007264 ORTHO05D008639 1.1e-08 64.3 74 44.6
Atru.chr3.3962 Acer truncatum HOM05D007264 ORTHO05D008639 7.5e-07 58.2 171 32.7
TAR369G0859 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.7e-06 57.0 104 42.3


User provided reference genes

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