Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.7e-285 984.6 477 100.0
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.9e-242 841.6 480 85.8
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.1e-236 821.6 480 84.0
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 7.6e-235 817.0 484 83.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.4e-233 812.8 484 84.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.4e-233 812.0 483 84.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 6.2e-229 797.3 478 81.4
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.4e-228 795.4 484 83.1
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.1e-217 760.0 485 78.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.2e-211 740.0 479 78.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 3.9e-207 724.9 482 75.1
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 7.4e-206 720.7 482 73.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.1e-204 716.8 483 75.4
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 5.9e-203 711.1 484 74.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.7e-203 710.7 484 73.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.3e-202 709.9 482 74.5
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 5.0e-202 708.0 484 74.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.1e-201 706.8 484 71.9
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 4.2e-201 704.9 488 73.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 4.2e-201 704.9 487 71.3
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.2e-200 703.4 486 73.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.5e-198 696.4 484 72.5
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.0e-198 696.0 486 72.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 9.7e-198 693.7 485 72.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.3e-197 693.3 482 72.0
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.2e-197 692.6 480 72.7
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.2e-197 692.6 481 73.6
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 8.2e-197 690.6 486 71.8
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.4e-196 689.1 482 71.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 4.1e-196 688.3 485 70.9
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.2e-195 686.8 484 72.5
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.5e-195 686.4 491 70.7
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.5e-195 684.9 487 71.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-194 682.9 485 70.9
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.5e-194 680.6 491 71.7
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.4e-193 679.9 481 70.7
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.2e-193 677.6 480 70.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 9.4e-193 677.2 487 71.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-192 676.4 481 70.5
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-192 676.0 480 70.6
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.9e-192 674.1 492 67.5
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.0e-191 673.7 479 69.1
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.0e-191 672.2 479 68.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 3.9e-191 671.8 483 70.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 6.7e-191 671.0 485 69.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.5e-190 669.8 483 67.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.7e-189 665.2 487 67.4
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 6.3e-189 664.5 480 68.5
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 4.1e-188 661.8 490 66.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 9.1e-188 660.6 510 66.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 9.1e-188 660.6 487 69.0
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.6e-187 659.1 530 66.6
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.6e-187 659.1 482 68.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 7.7e-187 657.5 486 67.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.8e-186 655.2 483 68.5
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.9e-185 652.9 528 66.3
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.2e-185 651.7 485 67.4
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 9.4e-185 650.6 486 66.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.6e-184 648.7 484 67.6
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.1e-184 647.9 506 68.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.8e-183 646.4 492 66.7
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 3.0e-183 645.6 483 66.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.5e-182 641.0 482 67.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.8e-181 638.3 541 63.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.1e-180 635.2 486 65.6
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 4.1e-180 635.2 527 61.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.3e-180 634.8 551 60.8
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 7.0e-180 634.4 442 71.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 9.1e-180 634.0 525 62.5
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.2e-179 633.6 490 66.3
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.3e-178 630.2 483 65.4
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.9e-178 629.0 526 62.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 8.5e-178 627.5 526 62.2
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.2e-177 625.5 487 64.3
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.5e-177 624.8 488 65.6
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.4e-177 624.0 488 65.4
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.2e-176 623.6 484 65.3
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.1e-176 622.9 508 63.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.6e-176 622.1 553 60.0
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 6.8e-175 617.8 526 60.3
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.6e-174 615.9 485 63.3
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.5e-174 614.4 527 61.5
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-173 613.6 439 70.8
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.2e-173 612.8 487 63.2
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 6.3e-173 611.3 482 64.7
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.3e-173 611.3 486 64.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 4.1e-172 608.6 441 69.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.5e-171 605.1 483 64.0
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.8e-170 602.1 483 63.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 8.5e-170 600.9 482 63.7
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.1e-169 600.5 483 63.1
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.1e-168 596.3 442 67.4
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 6.1e-168 594.7 484 62.8
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.4e-167 593.6 487 61.8
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 3.0e-167 592.4 487 61.6
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.8e-167 590.9 487 61.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.4e-166 588.6 480 61.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.7e-166 588.2 491 62.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 7.5e-166 587.8 481 62.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 9.8e-166 587.4 486 61.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.7e-165 586.6 481 62.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.8e-165 585.9 487 61.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.8e-165 585.9 480 61.5
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.8e-165 585.9 485 62.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-164 583.9 480 61.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.1e-164 583.9 480 61.2
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 4.1e-164 582.0 477 61.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.2e-163 580.5 483 62.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-163 580.1 484 61.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-162 577.0 480 60.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 6.6e-162 574.7 397 73.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 8.3e-157 557.8 396 71.2
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.3e-154 549.7 411 69.3
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.6e-154 548.1 395 70.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.6e-152 543.5 401 69.8
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.8e-151 540.0 292 84.9
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.3e-151 539.7 400 64.5
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.1e-148 528.9 494 53.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.6e-147 526.9 497 53.9
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.3e-146 523.9 443 63.4
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.3e-145 519.2 443 63.2
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 8.3e-141 504.6 448 62.3
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-140 503.8 353 73.4
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.7e-139 499.6 284 80.6
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-138 496.9 514 51.0
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.3e-138 496.5 406 59.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.6e-137 491.9 461 57.9
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.0e-134 483.4 463 54.6
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-133 480.7 289 76.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 3.2e-132 476.1 479 52.2
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.1e-132 475.7 414 61.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-128 463.8 320 67.5
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.3e-122 443.4 302 68.2
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.5e-115 419.5 314 62.1
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 4.6e-115 419.1 288 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.8e-112 409.8 531 44.6
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.9e-111 405.2 311 63.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 9.6e-105 384.8 304 58.9
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.2e-101 373.6 476 43.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 8.7e-98 361.7 418 45.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.2e-96 355.1 302 63.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.1e-81 308.1 373 46.4
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.1e-76 291.6 305 58.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.1e-71 273.5 432 42.1
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-69 268.1 205 63.4
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.4e-55 219.5 179 62.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-47 194.9 193 59.6
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-43 180.3 95 86.3
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.0e-42 177.2 93 86.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.4e-41 173.3 95 82.1
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.9e-40 170.6 144 59.7
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.9e-40 170.6 144 59.7
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-38 165.2 86 89.5
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-38 165.2 86 89.5
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.6e-38 164.9 194 53.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-35 155.2 127 65.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.8e-34 151.4 127 50.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 8.9e-34 149.1 146 54.8
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 6.4e-32 142.9 111 69.4
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.9e-31 141.4 123 65.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.2e-26 123.2 175 42.9
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 7.1e-23 112.8 193 39.9
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.9e-21 107.1 139 47.5
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.8e-18 98.2 158 44.9
Psat5g113520 Pisum sativum HOM05D004150 ORTHO05D329029 6.8e-18 96.3 96 56.2
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-13 82.0 74 63.5
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 5.1e-13 80.1 45 77.8
VMungo1309G0651 Vigna mungo HOM05D004150 ORTHO05D435762 6.2e-11 73.2 65 56.9


User provided reference genes

Program Settings