Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1578.9 833 100.0
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1456.0 836 92.0
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1445.6 835 91.0
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1444.9 835 90.5
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1441.4 835 90.4
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1438.7 835 90.4
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1433.7 834 89.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1420.6 836 90.0
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1416.4 836 90.0
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1393.6 835 88.6
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1370.9 834 86.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1361.3 836 85.3
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1350.5 839 84.7
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1349.7 837 84.5
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1342.4 837 84.1
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1339.7 841 84.1
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1335.1 836 83.7
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1328.9 840 83.0
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1327.8 836 84.0
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1323.1 838 83.8
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1322.4 840 83.1
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1321.6 838 82.8
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1315.4 839 82.0
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1314.3 837 82.8
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 835 83.1
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1313.5 839 81.8
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1311.2 836 82.7
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1310.4 836 82.1
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1309.3 837 84.5
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1305.8 840 82.4
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1305.4 835 82.5
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 838 81.7
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1303.1 835 82.0
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 838 80.7
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 841 80.9
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1295.8 840 81.9
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1295.4 841 80.6
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1294.6 840 81.9
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1290.4 839 80.7
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1289.6 840 81.7
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 839 80.5
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1279.6 840 80.0
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1278.8 839 79.9
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1273.8 840 78.8
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1272.3 860 79.5
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1270.0 839 79.6
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1261.5 833 80.0
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1259.2 837 79.3
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1258.8 929 73.8
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 837 78.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1251.9 837 78.4
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1250.0 837 77.5
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 840 77.5
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1247.6 837 77.7
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1245.7 838 77.4
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1245.3 845 77.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 837 77.8
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 837 78.3
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1239.6 840 76.7
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1239.2 838 76.7
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1238.4 837 76.7
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1238.0 841 78.4
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1236.5 839 77.5
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1234.9 837 76.9
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 834 78.3
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 839 77.0
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1228.8 837 76.7
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1228.8 837 76.2
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1228.0 839 77.1
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1227.2 834 77.1
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 838 76.5
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 856 75.0
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1219.9 839 76.4
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1219.9 839 76.6
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1218.8 839 76.3
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1217.6 856 74.8
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1215.7 840 75.7
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1213.7 854 76.5
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1213.4 840 75.8
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 838 76.5
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 839 75.7
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 854 76.2
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1203.7 834 75.9
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1198.3 837 75.4
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1193.3 836 75.7
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 680 91.3
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 836 74.0
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1182.5 838 73.3
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1181.0 833 78.4
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1176.4 807 76.7
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1172.5 837 73.2
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1152.1 855 71.6
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1149.0 746 80.7
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1140.2 837 72.2
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1138.6 724 83.1
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1136.3 996 63.9
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1129.8 864 72.5
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1088.2 840 68.6
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 5.5e-289 997.7 719 71.2
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.7e-256 888.3 851 55.9
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.2e-251 873.6 864 56.5
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 9.5e-241 837.4 518 82.4
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.9e-237 825.9 832 53.7
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.7e-227 792.7 542 75.6
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 3.5e-227 792.3 603 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 5.0e-226 788.5 750 57.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 2.5e-225 786.2 543 75.9
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.7e-213 746.9 512 77.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.2e-213 746.5 614 66.8
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 9.6e-201 704.5 898 46.7
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.1e-192 676.8 428 85.3
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 9.6e-185 651.4 445 80.4
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.6e-184 650.6 560 63.9
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.6e-171 606.3 441 73.9
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.7e-157 560.8 398 73.6
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.2e-157 560.5 343 84.3
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.2e-144 517.3 380 73.4
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.3e-125 454.9 369 68.0
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.8e-119 434.5 341 67.7
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.0e-117 428.7 293 77.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 2.5e-108 397.5 424 56.4
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 6.4e-104 382.9 234 81.2
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 6.4e-104 382.9 234 80.8
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 7.1e-103 379.4 257 79.0
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 4.3e-100 370.2 859 31.8
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-80 305.4 210 74.3
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.9e-76 291.6 857 28.0
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.4e-68 263.1 270 56.3
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-64 252.3 230 63.9
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.5e-63 248.1 200 65.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.5e-60 238.0 288 49.3
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 4.1e-58 230.7 179 69.8
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 6.7e-53 213.4 209 63.6
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 6.7e-53 213.4 129 88.4
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.4e-50 205.7 130 77.7
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 1.0e-45 189.5 121 76.0
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 5.7e-44 183.7 105 92.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 1.0e-40 172.9 104 80.8
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 6.5e-40 170.2 104 79.8
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 6.5e-40 170.2 130 68.5
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 3.0e-37 161.4 95 82.1
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 2.0e-36 158.7 95 78.9
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.3e-32 146.0 97 75.3
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 2.2e-32 145.2 230 43.0
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 5.5e-31 140.6 95 73.7
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.4e-28 131.0 95 71.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.3e-27 127.1 95 69.5
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.0e-25 122.1 87 80.5
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 2.7e-25 121.7 176 42.6
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 4.5e-25 120.9 212 40.6
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 6.1e-22 110.5 227 36.6
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 8.0e-22 110.2 82 70.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.0e-21 109.8 142 49.3
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-19 102.8 99 48.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 2.4e-18 98.6 92 60.9
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.1e-18 97.8 72 76.4
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 2.7e-17 95.1 78 70.5
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 3.4e-12 78.2 158 36.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 2.8e-11 75.1 96 49.0
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 8.6e-08 63.5 67 52.2
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 3.3e-07 61.6 61 55.7
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 1.6e-06 59.3 126 34.1


User provided reference genes

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