Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 5.1e-176 620.9 305 100.0
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 2.1e-137 492.7 306 80.4
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 6.3e-126 454.5 306 75.8
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.1e-125 452.2 307 75.6
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.8e-118 429.1 304 72.4
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 9.2e-117 424.1 305 70.5
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 4.5e-116 421.8 308 72.1
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.1e-113 412.9 286 74.5
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.0e-112 409.1 309 70.2
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 4.0e-112 408.7 309 69.9
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.5e-95 353.6 300 59.7
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.4e-95 352.4 302 61.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.8e-95 351.7 302 61.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 9.8e-95 350.9 295 59.7
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.4e-93 347.1 292 60.3
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.4e-93 347.1 295 59.0
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.4e-93 347.1 295 59.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 9.2e-93 344.4 317 58.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.6e-92 343.6 297 58.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.1e-92 343.2 303 59.1
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 2.7e-92 342.8 295 59.0
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.7e-91 340.1 300 60.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 8.6e-91 337.8 301 58.1
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 8.6e-91 337.8 295 59.7
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 8.6e-91 337.8 290 59.3
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.5e-90 337.0 296 60.1
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.9e-90 336.7 296 59.5
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.5e-90 336.3 295 56.9
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.2e-89 334.0 291 58.8
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.6e-89 333.6 301 58.5
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.6e-89 332.4 300 57.7
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 3.1e-88 329.3 296 57.1
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.8e-87 325.1 293 54.6
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.6e-87 324.7 290 59.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.2e-86 323.2 292 56.5
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.8e-86 322.4 292 54.5
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 3.8e-86 322.4 292 58.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 4.9e-86 322.0 292 57.5
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 6.4e-86 321.6 290 55.9
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 8.4e-86 321.2 289 57.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.4e-85 320.5 291 58.1
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.4e-85 319.7 295 58.0
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 3.2e-85 319.3 289 55.7
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 9.2e-85 317.8 302 53.0
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 9.2e-85 317.8 295 53.6
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 9.2e-85 317.8 292 54.1
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.2e-84 317.4 292 54.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.7e-84 316.2 294 53.4
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 6.0e-84 315.1 293 53.6
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 2.3e-83 313.2 292 55.1
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.6e-83 311.2 294 56.5
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.5e-82 310.5 311 51.4
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.5e-82 310.5 306 55.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.9e-82 310.1 289 54.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-81 307.4 302 52.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.2e-81 307.4 291 54.0
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.6e-81 307.0 272 58.8
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.6e-81 307.0 294 54.1
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 6.2e-81 305.1 292 53.8
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.1e-80 304.3 303 54.5
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.8e-80 303.5 320 53.4
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 5.2e-80 302.0 292 53.8
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 8.9e-80 301.2 295 52.9
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 8.9e-80 301.2 314 52.2
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.0e-79 300.1 295 54.9
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.6e-79 299.7 305 51.5
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.6e-79 299.7 298 54.0
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 2.9e-78 296.2 287 53.0
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.8e-78 295.8 301 52.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 6.4e-78 295.0 293 51.2
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 8.4e-78 294.7 291 53.3
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.1e-77 294.3 312 50.6
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 7.8e-76 288.1 300 53.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-74 283.9 272 54.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.9e-74 283.5 294 53.1
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 4.8e-73 278.9 293 52.6
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 4.8e-73 278.9 277 54.9
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.4e-72 277.3 291 50.5
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.4e-72 277.3 288 51.4
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 4.0e-72 275.8 281 52.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 2.6e-71 273.1 218 60.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.5e-66 256.5 300 48.7
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 9.6e-66 254.6 312 47.1
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 2.1e-65 253.4 277 52.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.4e-64 250.8 251 55.4
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.1e-64 249.6 173 69.4
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 4.5e-63 245.7 344 41.3
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 4.9e-62 242.3 296 48.6
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 7.9e-60 235.0 276 48.6
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 8.7e-59 231.5 173 63.6
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.1e-58 231.1 173 61.3
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 5.6e-58 228.8 297 44.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-56 223.4 295 45.8
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.4e-56 223.4 282 43.3
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-53 214.2 306 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.9e-53 213.8 301 41.9
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-53 212.6 139 69.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.0e-51 206.5 292 41.1
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 3.3e-50 203.0 278 42.1
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 4.3e-50 202.6 171 63.7
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.4e-48 196.8 157 61.1
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.0e-47 193.7 118 76.3
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.0e-47 193.7 118 76.3
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 3.4e-47 193.0 288 41.3
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.6e-44 182.6 270 41.9
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 5.7e-42 175.6 295 36.9
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.1e-40 169.9 102 77.5
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.3e-40 169.1 298 35.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.5e-39 167.5 281 40.6
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.3e-38 164.5 301 36.9
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.3e-38 164.5 284 39.8
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.2e-38 163.7 309 36.2
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.5e-38 162.2 295 36.9
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.5e-38 162.2 301 37.9
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.4e-37 161.0 301 35.9
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 4.2e-37 159.5 102 71.6
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.8e-35 154.1 218 43.1
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 2.3e-35 153.7 95 76.8
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.1e-35 152.5 229 42.8
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.0e-34 150.6 311 34.1
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.3e-34 149.8 172 47.7
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.7e-34 149.1 118 60.2
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.8e-33 146.7 192 44.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-32 144.8 211 41.7
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.7e-28 130.2 159 46.5
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.1e-24 116.7 102 55.9
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 3.5e-23 113.2 113 54.9
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 1.2e-18 98.2 206 35.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 9.7e-18 95.1 50 88.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 9.7e-18 95.1 162 38.9
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.7e-17 93.2 163 39.9
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 6.3e-17 92.4 55 76.4
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.0e-15 87.4 50 80.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 5.2e-11 72.8 72 56.9
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.7e-09 66.6 107 35.5
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 2.4e-08 63.9 98 38.8
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 1.6e-07 61.2 62 54.8
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 2.7e-07 60.5 60 56.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.5e-07 60.1 50 66.0
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 4.5e-07 59.7 71 45.1


User provided reference genes

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