Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.7e-138 496.1 277 100.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 92.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 92.1
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 91.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 90.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.2
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.8
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 6.6e-122 441.0 301 85.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.7
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.7
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 86.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 87.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.3
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 87.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 86.6
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 86.6
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 86.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 86.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 86.3
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 87.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 86.3
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 86.6
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 85.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 85.6
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 84.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 85.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.6
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 85.6
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 84.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 86.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 85.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 85.2
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 84.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 84.8
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 84.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 84.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 84.8
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-117 425.6 320 78.1
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 85.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 84.8
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 84.8
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 84.1
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 84.5
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.9e-117 424.9 276 85.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 83.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 84.1
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.4e-116 422.5 277 84.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 2.4e-116 422.5 277 85.6
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 3.2e-116 422.2 276 85.5
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 83.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 85.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 9.2e-116 420.6 277 84.1
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.2e-115 420.2 278 83.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 84.8
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 7.8e-115 417.5 261 87.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.0e-114 417.2 277 82.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.7e-114 416.4 274 82.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.7e-114 416.4 283 81.3
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.0e-114 415.6 277 82.3
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.9e-114 415.2 277 84.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.6e-114 414.5 277 82.3
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-113 413.7 277 81.9
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.5e-113 413.3 277 80.5
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.5e-113 412.5 274 81.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.2e-112 410.2 278 82.4
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.8e-112 409.1 275 83.6
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 3.6e-112 408.7 277 79.8
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.6e-112 408.7 321 73.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.7e-112 408.3 261 85.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.7e-112 408.3 261 85.1
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.3e-111 406.0 277 79.4
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 4.0e-111 405.2 275 80.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 83.8
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.6e-110 402.5 277 77.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.6e-110 402.5 273 81.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.4e-110 402.1 270 83.7
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.2e-109 399.4 274 81.8
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.2e-109 399.4 277 80.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.9e-109 398.3 278 81.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.1e-108 397.1 280 79.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-108 397.1 275 80.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.1e-108 397.1 275 80.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.1e-108 397.1 278 79.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-107 392.9 260 85.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-107 392.1 318 70.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.7e-106 389.8 264 83.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-106 389.4 277 78.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 6.6e-106 387.9 299 71.2
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.1e-105 387.1 271 80.8
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.9e-105 386.3 255 85.1
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 5.6e-105 384.8 318 67.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.3e-105 384.4 278 76.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.2e-104 383.6 277 76.5
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.7e-104 381.7 269 74.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-103 377.9 331 71.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 8.9e-103 377.5 275 77.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.0e-102 376.3 256 80.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.4e-102 375.2 271 78.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.7e-101 372.1 274 71.2
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.4e-100 370.2 345 61.4
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.4e-100 369.4 256 79.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 7.1e-100 367.9 277 75.1
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.8e-96 355.9 230 87.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 4.0e-95 352.1 230 83.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.9e-93 345.1 222 86.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.1e-91 339.7 268 71.6
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.0e-91 338.2 250 79.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.0e-91 338.2 250 79.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.0e-90 337.4 222 83.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.1e-89 334.0 278 64.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.4e-87 327.0 224 83.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 3.1e-87 325.9 274 65.7
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.3e-85 320.5 281 65.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.3e-85 320.5 277 63.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-84 317.0 274 68.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.9e-84 316.6 314 64.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.2e-84 315.5 283 64.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-83 313.5 274 68.2
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 4.5e-70 268.9 187 82.4
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-69 266.9 282 58.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.8e-69 265.8 258 60.1
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.0e-66 256.1 274 54.7
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-57 227.6 181 76.8
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.3e-57 226.1 156 73.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.0e-54 216.9 138 81.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-54 216.9 145 86.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.6e-51 207.2 129 81.4
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 4.6e-51 205.7 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.1e-47 192.6 306 43.5
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.9e-45 186.4 106 90.6
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 3.6e-43 179.5 97 94.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 4.8e-40 169.1 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.7e-35 153.3 81 92.6
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.3e-33 146.4 155 58.7
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.5e-28 129.0 74 86.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.5e-28 129.0 74 86.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.2e-28 128.6 88 71.6
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-27 127.5 80 78.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.5e-20 103.6 151 47.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-19 101.3 257 35.4
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-19 99.8 102 57.8
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.0e-18 98.2 143 49.0
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 75 82.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.0e-18 96.3 156 40.4
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 6.8e-18 95.5 57 80.7
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 8.8e-18 95.1 91 65.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 2.0e-17 94.0 147 40.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-17 91.7 75 76.0
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 4.9e-16 89.4 157 40.8
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.1e-15 88.2 152 40.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-13 81.3 45 91.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-13 80.9 151 35.1
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-12 78.2 44 86.4
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.5e-12 77.8 50 72.0
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.2e-11 74.7 149 40.9
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-11 74.7 43 83.7
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-10 71.6 169 34.9
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 5.2e-10 69.3 236 33.9
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.3e-08 62.0 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.4e-07 59.3 38 76.3


User provided reference genes

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