Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.1e-149 532.3 264 100.0
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.1e-146 522.3 279 94.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 7.2e-102 374.4 282 70.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.2e-100 368.2 263 73.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.3e-99 365.5 279 68.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 8.2e-98 360.9 270 69.6
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.4e-97 359.4 279 68.1
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.4e-97 359.4 246 75.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 3.1e-97 359.0 262 73.7
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.3e-97 358.2 270 69.6
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.7e-96 355.9 280 70.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.2e-93 347.1 271 67.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-93 347.1 219 78.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.6e-93 346.7 271 67.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.4e-92 343.6 271 67.2
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.4e-92 343.6 273 66.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 8.8e-92 340.9 215 78.6
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 2.6e-91 339.3 230 74.3
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.4e-91 339.0 218 77.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 7.5e-91 337.8 235 73.6
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 7.5e-91 337.8 226 74.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 9.8e-91 337.4 213 77.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 3.7e-90 335.5 218 76.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 6.3e-90 334.7 220 75.9
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 6.3e-90 334.7 230 73.9
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.4e-89 333.6 223 73.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.4e-89 333.6 295 62.0
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.8e-89 333.2 235 72.8
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.8e-89 333.2 219 76.7
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.8e-89 333.2 242 69.4
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.4e-89 332.8 219 75.8
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 4.1e-89 332.0 256 69.9
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 5.4e-89 331.6 224 74.1
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.2e-88 330.5 269 63.2
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.5e-88 328.9 234 75.2
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.5e-88 328.9 213 77.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 3.5e-88 328.9 218 73.9
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.2e-87 326.2 236 70.3
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.2e-87 326.2 215 74.0
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.9e-87 325.9 240 69.6
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.5e-86 323.6 218 73.4
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.5e-86 323.6 228 71.1
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.2e-86 322.0 234 71.4
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 4.2e-86 322.0 209 76.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 9.4e-86 320.9 235 68.5
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.2e-85 320.5 267 65.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.2e-85 320.5 215 72.1
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.7e-85 319.3 218 73.4
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 3.6e-85 318.9 235 69.8
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 3.6e-85 318.9 235 69.8
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 3.6e-85 318.9 235 69.8
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 3.6e-85 318.9 235 69.8
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.6e-85 318.9 220 69.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.6e-85 318.9 219 75.3
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.6e-85 318.9 235 70.2
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 8.0e-85 317.8 235 69.8
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 8.0e-85 317.8 228 71.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.0e-84 317.4 231 71.0
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.4e-84 317.0 233 69.5
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.8e-84 316.6 221 71.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-84 315.8 235 69.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.0e-84 315.8 227 67.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 5.2e-84 315.1 234 69.7
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 6.8e-84 314.7 234 69.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 6.8e-84 314.7 234 69.7
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 8.8e-84 314.3 227 70.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 8.8e-84 314.3 232 66.8
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-83 313.2 240 65.8
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.4e-83 312.4 234 69.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.4e-83 312.0 245 66.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.4e-83 312.0 210 75.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 7.5e-83 311.2 224 70.1
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.3e-82 310.5 219 71.2
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.7e-82 310.1 216 73.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.9e-82 308.5 213 73.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.9e-82 308.5 213 73.2
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 6.3e-82 308.1 215 71.2
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.3e-82 308.1 219 70.8
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.1e-81 307.4 244 65.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.8e-81 306.6 230 67.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.4e-81 306.2 213 72.3
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 5.4e-81 305.1 282 60.3
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.0e-79 300.8 231 65.4
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.3e-79 299.7 218 68.3
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-79 299.7 226 68.6
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.8e-79 298.9 234 65.8
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 8.6e-79 297.7 226 69.0
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 8.6e-79 297.7 226 69.0
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.5e-78 296.2 235 65.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.3e-78 295.8 226 68.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 7.3e-78 294.7 226 68.1
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-77 293.9 226 68.1
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.6e-77 293.5 213 70.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.1e-77 293.1 216 67.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.8e-77 292.7 232 64.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.0e-76 290.8 230 65.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.8e-76 290.0 212 68.9
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.0e-76 289.3 217 67.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 5.2e-76 288.5 224 67.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.2e-76 288.5 212 68.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.8e-76 288.1 229 66.4
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.2e-75 287.3 231 63.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-75 287.3 277 58.8
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-75 287.3 229 65.9
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.2e-75 287.3 229 65.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.4e-75 285.8 208 69.7
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.4e-75 285.8 220 68.6
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.4e-75 285.4 213 68.5
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.7e-75 285.0 212 67.0
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.5e-75 284.6 212 67.0
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.8e-75 284.3 277 58.5
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.2e-74 283.1 213 67.6
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.2e-74 283.1 254 59.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.7e-74 282.3 217 65.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 4.9e-74 282.0 213 66.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.9e-74 282.0 209 66.5
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.9e-74 282.0 183 77.6
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.4e-74 281.6 213 68.1
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 8.3e-74 281.2 225 63.1
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.8e-73 280.0 224 62.9
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.4e-73 279.6 212 64.2
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.4e-73 279.6 223 64.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.0e-73 278.1 210 67.1
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 7.0e-73 278.1 223 64.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.0e-73 278.1 220 65.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 2.0e-72 276.6 279 55.9
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.7e-72 276.2 274 57.3
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.0e-71 272.7 224 61.2
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 5.0e-71 271.9 216 62.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 5.0e-71 271.9 216 62.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-70 270.8 216 62.0
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-70 270.8 216 62.0
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-70 270.8 216 62.0
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-70 270.4 216 62.0
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.5e-70 270.4 243 60.5
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.8e-69 266.2 211 65.9
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.8e-69 266.2 205 68.3
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.1e-68 262.7 222 61.3
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.0e-68 262.3 237 59.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 6.8e-68 261.5 207 63.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.4e-67 259.2 190 70.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 4.1e-65 252.3 182 71.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.7e-63 246.9 225 56.4
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.6e-63 244.6 323 48.9
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.5e-59 231.5 223 58.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 6.4e-58 228.4 204 59.3
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-56 224.2 207 56.5
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.7e-53 212.2 214 53.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.7e-53 212.2 216 53.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 4.0e-52 209.1 143 74.8
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-51 207.6 143 74.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 6.4e-50 201.8 220 50.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 5.6e-46 188.7 135 71.1
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.7e-40 169.9 119 68.9
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.5e-40 169.5 235 43.8
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 4.6e-40 169.1 177 54.2
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.6e-31 138.7 168 45.2
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.8e-29 133.3 115 59.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-27 127.9 76 78.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.7e-15 85.1 64 64.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.4e-12 77.0 73 53.4
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 5.3e-12 75.9 68 54.4
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 7.6e-11 72.0 75 49.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.8e-10 69.7 99 42.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 7.2e-09 65.5 72 51.4
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.7e-08 63.5 44 70.5


User provided reference genes

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