Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 4.5e-49 197.6 99 100.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.8e-29 132.5 99 72.7
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 9.8e-28 126.7 99 73.7
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 9.2e-26 120.2 100 67.0
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 7.8e-25 117.1 99 65.7
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.5e-23 112.8 99 58.6
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.4e-21 106.3 99 58.6
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.4e-21 106.3 99 58.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 1.4e-21 106.3 102 61.8
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.3e-21 105.5 87 64.4
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.3e-21 105.5 99 59.6
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.3e-21 105.5 89 65.2
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 3.1e-21 105.1 99 56.6
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 6.8e-21 104.0 99 60.6
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 6.8e-21 104.0 105 61.0
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 8.9e-21 103.6 98 61.2
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 4.4e-20 101.3 100 60.0
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.3e-19 99.8 100 59.0
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 4.9e-19 97.8 99 52.5
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 4.9e-19 97.8 98 60.2
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.1e-18 96.7 91 61.5
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.1e-18 96.7 100 57.0
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.4e-18 95.5 99 53.5
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 4.1e-18 94.7 101 58.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 5.4e-18 94.4 93 58.1
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.0e-17 92.4 101 57.4
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 2.7e-17 92.0 99 54.5
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.7e-17 92.0 96 54.2
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 3.5e-17 91.7 102 54.9
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.6e-17 91.3 95 55.8
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 7.8e-17 90.5 100 53.0
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 1.0e-16 90.1 103 58.3
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.0e-16 90.1 94 54.3
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.0e-16 90.1 99 56.6
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.0e-16 90.1 98 56.1
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 3.0e-16 88.6 99 58.6
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 3.9e-16 88.2 73 64.4
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 3.9e-16 88.2 103 51.5
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.0e-16 87.8 101 50.5
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 6.6e-16 87.4 101 50.5
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.6e-16 87.4 100 54.0
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 8.6e-16 87.0 94 54.3
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.1e-15 86.7 91 60.4
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.5e-15 86.3 90 56.7
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.5e-15 86.3 94 53.2
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.9e-15 85.9 94 52.1
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.9e-15 85.9 96 53.1
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 3.3e-15 85.1 107 57.9
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 4.3e-15 84.7 97 50.5
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.6e-14 82.8 97 49.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 2.1e-14 82.4 95 53.7
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.1e-14 82.4 98 52.0
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.8e-14 82.0 100 54.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.1e-14 80.5 91 56.0
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.8e-13 79.3 101 52.5
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 3.1e-13 78.6 96 53.1
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 3.1e-13 78.6 97 47.4
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.0e-13 78.2 93 57.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 6.8e-13 77.4 100 50.0
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.5e-12 76.3 97 46.4
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.0e-12 75.9 91 48.4
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.9e-11 72.0 80 55.0
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.9e-11 72.0 80 55.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 2.9e-11 72.0 82 54.9
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.4e-11 70.9 72 59.7
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 6.4e-11 70.9 91 45.1
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 8.3e-11 70.5 95 48.4
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 8.3e-11 70.5 85 54.1
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 8.3e-11 70.5 97 48.5
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.4e-10 68.9 98 48.0
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 7.1e-10 67.4 99 43.4
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 9.2e-10 67.0 99 42.4
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 1.6e-09 66.2 99 45.5
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 3.5e-09 65.1 79 51.9
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.6e-09 64.7 95 42.1
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.0e-09 64.3 87 50.6
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 7.8e-09 63.9 45 64.4
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 2.3e-08 62.4 89 48.3
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.5e-07 59.7 95 47.4
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.5e-07 58.9 95 47.4
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 3.3e-07 58.5 95 47.4
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 4.3e-07 58.2 89 40.4
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 5.6e-07 57.8 52 53.8
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 9.5e-07 57.0 94 47.9
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.2e-06 56.6 46 54.3
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 1.6e-06 56.2 69 53.6
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.8e-06 55.5 97 40.2
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 4.7e-06 54.7 45 62.2
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 8.1e-06 53.9 98 34.7
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 8.1e-06 53.9 97 42.3


User provided reference genes

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