Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 4.0e-118 428.3 254 100.0
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 2.0e-77 293.1 257 73.9
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 4.5e-77 292.0 258 70.9
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 1.9e-75 286.6 257 71.2
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 2.1e-66 256.5 249 67.5
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 2.7e-66 256.1 249 67.1
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 3.6e-66 255.8 256 66.8
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 1.1e-62 244.2 255 57.6
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 3.1e-62 242.7 256 64.5
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 2.5e-59 233.0 256 64.5
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.8e-57 226.9 245 64.5
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 8.9e-57 224.6 245 63.7
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 9.2e-46 188.0 270 55.9
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 1.7e-39 167.2 231 52.4
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 8.3e-39 164.9 253 44.7
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 7.1e-38 161.8 233 51.5
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.6e-37 160.6 266 49.2
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 2.1e-37 160.2 270 46.7
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.1e-35 154.5 258 50.4
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 4.3e-35 152.5 236 47.5
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.8e-34 149.8 249 42.2
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 5.2e-33 145.6 180 48.9
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 2.6e-32 143.3 196 46.9
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 3.4e-32 142.9 242 49.6
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 7.6e-32 141.7 181 48.1
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 1.3e-31 141.0 225 45.3
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 1.7e-31 140.6 260 45.8
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 2.2e-31 140.2 270 48.5
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.2e-31 140.2 237 43.5
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 6.4e-31 138.7 270 47.0
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 6.4e-31 138.7 265 43.0
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.9e-30 137.1 238 39.5
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 1.2e-29 134.4 196 54.6
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.6e-29 134.0 204 48.0
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 3.5e-29 132.9 187 49.7
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 3.0e-28 129.8 231 48.5
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 3.0e-28 129.8 249 43.4
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 1.1e-27 127.9 145 62.1
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.9e-27 127.1 229 45.4
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 4.3e-27 125.9 153 54.9
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 4.3e-27 125.9 254 37.8
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 4.3e-27 125.9 268 42.2
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 7.3e-27 125.2 210 50.0
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 9.6e-27 124.8 261 41.0
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 1.2e-26 124.4 177 51.4
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 1.2e-26 124.4 190 51.6
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.2e-26 124.4 164 54.3
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 1.6e-26 124.0 95 63.2
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 3.6e-26 122.9 265 38.5
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 6.2e-26 122.1 197 41.6
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 8.1e-26 121.7 170 43.5
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 8.1e-26 121.7 237 43.0
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 8.1e-26 121.7 229 39.7
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 3.1e-25 119.8 222 45.0
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 8.9e-25 118.2 187 40.6
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 8.9e-25 118.2 169 44.4
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 1.2e-24 117.9 215 40.5
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 2.0e-24 117.1 205 45.9
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 4.4e-24 115.9 116 71.6
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 4.4e-24 115.9 184 41.3
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 5.8e-24 115.5 107 57.9
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 7.6e-24 115.2 233 38.2
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.3e-23 114.4 223 42.2
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 2.2e-23 113.6 188 41.0
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 2.2e-23 113.6 188 43.6
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 2.9e-23 113.2 147 46.9
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 3.8e-23 112.8 190 43.2
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 3.8e-23 112.8 193 44.6
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 6.4e-23 112.1 185 43.8
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 8.4e-23 111.7 212 49.1
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 3.2e-22 109.8 180 40.6
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 5.4e-22 109.0 239 43.9
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 9.3e-22 108.2 211 45.5
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 9.3e-22 108.2 161 41.0
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 2.1e-21 107.1 185 42.7
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 2.7e-21 106.7 203 38.4
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 6.0e-21 105.5 180 43.3
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 7.8e-21 105.1 187 41.7
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 7.8e-21 105.1 134 56.0
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.3e-20 104.4 195 44.6
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 2.3e-20 103.6 188 43.1
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 2.3e-20 103.6 206 39.8
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 3.0e-20 103.2 226 39.8
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 3.9e-20 102.8 212 39.6
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 5.1e-20 102.4 212 40.6
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 5.1e-20 102.4 226 39.8
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 6.6e-20 102.1 175 56.0
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 8.7e-20 101.7 193 42.0
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 8.7e-20 101.7 124 64.5
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.1e-19 101.3 195 41.0
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.1e-19 101.3 90 55.6
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 2.5e-19 100.1 215 40.0
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 2.5e-19 100.1 174 41.4
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 3.3e-19 99.8 216 37.5
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 3.3e-19 99.8 217 37.8
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 4.3e-19 99.4 219 37.9
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 7.3e-19 98.6 147 42.2
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 1.6e-18 97.4 265 37.0
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 2.1e-18 97.1 252 39.3
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 1.8e-17 94.0 63 66.7
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 3.1e-17 93.2 114 64.0
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 5.3e-17 92.4 101 69.3
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 2.2e-15 87.0 170 38.8
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 8.4e-15 85.1 143 49.7
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 5.4e-14 82.4 243 38.3
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 2.1e-13 80.5 188 39.9
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 1.8e-12 77.4 214 40.2
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 3.0e-12 76.6 54 63.0
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 1.1e-11 74.7 226 32.3
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 1.1e-11 74.7 221 31.2
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 1.3e-10 71.2 136 39.7
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 2.4e-09 67.0 32 96.9
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 4.0e-09 66.2 195 29.7
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 1.2e-08 64.7 106 41.5
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 2.0e-08 63.9 103 35.9
Haze_16651 Corylus avellana HOM05D005915 ORTHO05D007239 5.8e-08 62.4 121 44.6
TAR625G0588 Trochodendron aralioides HOM05D005915 ORTHO05D007239 5.5e-06 55.8 50 50.0


User provided reference genes

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