Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.4e-282 975.7 509 100.0
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.9e-244 849.0 468 94.2
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.5e-244 846.7 468 93.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 2.1e-243 845.5 468 94.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 8.9e-242 840.1 468 93.6
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.6e-238 827.8 481 90.4
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 3.4e-233 811.6 468 90.8
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.3e-232 809.7 468 90.4
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 2.2e-232 808.9 467 89.9
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 6.4e-232 807.4 468 89.5
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 8.4e-232 807.0 468 90.4
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 8.4e-232 807.0 468 90.8
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 8.4e-232 807.0 468 89.7
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.1e-231 806.6 470 90.2
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.4e-231 805.4 468 89.5
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.2e-231 805.1 468 89.7
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.2e-231 805.1 468 89.1
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.4e-231 804.3 468 89.7
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 7.1e-231 803.9 468 88.5
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.2e-230 803.1 468 89.3
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.6e-230 802.7 468 89.1
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.7e-230 802.0 469 88.9
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.5e-230 801.6 468 89.5
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 6.0e-230 800.8 468 89.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.0e-229 800.0 468 89.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.3e-229 799.7 468 88.5
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.1e-228 796.6 469 88.3
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.1e-228 796.6 468 86.3
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.5e-228 796.2 468 88.0
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.5e-228 796.2 468 88.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 2.1e-227 792.3 468 88.5
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 3.6e-227 791.6 468 87.0
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 6.2e-227 790.8 468 86.5
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.8e-226 789.3 468 89.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 3.1e-226 788.5 468 88.5
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.0e-225 785.8 505 83.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.6e-225 785.4 468 87.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.5e-225 784.6 468 87.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.7e-224 782.7 469 86.4
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.7e-224 782.7 468 86.8
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.2e-224 782.3 468 86.5
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.8e-224 781.6 505 82.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 3.8e-224 781.6 469 86.1
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.1e-223 780.0 468 88.2
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-223 780.0 468 86.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-223 780.0 468 86.1
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 2.4e-223 778.9 468 85.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 3.2e-223 778.5 492 83.9
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 7.1e-223 777.3 468 86.3
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 9.3e-223 776.9 468 86.5
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.3e-221 773.1 469 85.3
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.9e-221 771.5 468 85.3
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.9e-221 771.5 469 86.1
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.5e-220 769.6 468 85.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 3.3e-220 768.5 463 86.6
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 7.4e-220 767.3 469 85.7
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.1e-219 763.8 468 84.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.4e-218 763.1 468 83.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.4e-218 762.3 468 84.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 6.9e-218 760.8 468 85.0
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.2e-217 760.0 448 89.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 2.0e-217 759.2 468 84.2
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.5e-217 758.1 468 84.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 4.5e-217 758.1 468 84.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 5.8e-217 757.7 468 83.5
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 5.8e-217 757.7 468 84.0
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 9.9e-217 756.9 468 84.0
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 9.9e-217 756.9 468 84.0
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 4.9e-216 754.6 468 83.1
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 5.5e-215 751.1 468 82.9
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.7e-214 748.8 544 75.4
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.6e-214 748.0 468 82.9
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.6e-214 748.0 468 82.3
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 6.0e-214 747.7 468 82.5
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 3.0e-213 745.3 469 82.5
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 3.0e-213 745.3 469 82.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 4.3e-212 741.5 469 83.8
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 7.4e-212 740.7 468 83.3
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.3e-211 740.0 496 79.0
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-211 739.6 470 82.1
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.6e-211 739.6 468 81.8
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.4e-210 736.5 492 78.7
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 6.9e-210 734.2 468 82.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.4e-208 727.2 490 79.6
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.4e-208 727.2 469 82.7
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 8.4e-208 727.2 441 86.2
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.4e-202 709.1 491 77.6
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 3.8e-200 701.8 418 88.0
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 3.8e-200 701.8 418 88.0
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 4.6e-198 694.9 418 87.1
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.2e-193 680.2 470 79.6
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.6e-193 679.1 396 89.6
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.9e-193 677.9 418 85.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.2e-191 672.2 461 77.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 2.6e-188 662.5 468 72.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.3e-187 657.9 468 77.6
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.2e-185 653.7 423 81.3
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.2e-184 649.4 382 89.3
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 7.2e-183 644.4 374 90.1
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 5.3e-170 601.7 365 89.0
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 6.5e-168 594.7 339 93.2
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.6e-166 590.1 373 82.3
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 2.1e-166 589.7 350 87.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.7e-163 580.1 464 65.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 4.1e-162 575.5 468 68.4
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.1e-159 567.4 469 60.6
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.2e-156 557.4 323 92.3
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 4.1e-138 495.7 312 79.2
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.5e-135 484.6 308 85.1
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 4.6e-129 465.7 365 70.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.9e-128 462.6 323 78.0
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.9e-111 407.1 245 88.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.9e-88 329.7 312 62.5
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 9.7e-87 325.1 238 74.8
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 4.2e-82 309.7 182 82.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.6e-81 306.6 173 86.7
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.6e-81 306.6 301 56.8
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.1e-79 301.6 505 37.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-69 268.5 293 53.9
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.2e-68 265.0 210 57.6
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 4.5e-68 263.1 159 88.7
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 2.2e-59 234.2 137 92.0
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.9e-59 233.8 407 42.3
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 6.5e-59 232.6 195 69.2
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.1e-53 215.3 118 95.8
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 4.7e-49 199.9 500 30.4
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 4.4e-47 193.4 328 37.8
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.1e-45 187.2 110 89.1
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 7.7e-44 182.6 107 82.2
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 1.9e-42 177.9 115 82.6
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.8e-41 174.1 105 80.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.8e-38 164.1 90 93.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.7e-30 138.3 76 90.8
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 6.0e-28 129.8 74 86.5
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 3.0e-27 127.5 81 81.5
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.5e-26 125.2 72 84.7
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.9e-26 124.8 72 83.3
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.3e-26 123.6 72 83.3
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.1e-25 121.3 74 79.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 8.9e-24 115.9 79 74.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.6e-23 114.4 99 65.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-20 105.1 57 87.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 8.6e-19 99.4 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 3.4e-15 87.4 52 86.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.4e-14 83.2 57 78.9
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.4e-13 82.0 52 86.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.4e-13 81.3 46 95.7
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.2e-13 80.9 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 2.7e-12 77.8 74 59.5
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 3.8e-06 57.4 33 87.9


User provided reference genes

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