Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 9.6e-217 756.5 375 100.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 9.6e-217 756.5 375 100.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-216 755.4 375 99.7
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 8.7e-186 653.7 354 93.2
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 7.7e-182 640.6 354 91.0
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.8e-144 515.0 358 73.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-132 477.2 342 70.5
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.9e-132 476.5 355 69.0
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 9.5e-132 474.2 371 65.2
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 8.3e-128 461.1 337 70.6
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.9e-127 459.9 353 67.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.4e-127 459.5 342 69.9
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.2e-127 459.1 372 63.7
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 3.2e-127 459.1 372 63.7
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 3.2e-127 459.1 371 64.4
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.2e-126 457.2 371 63.6
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.0e-125 454.1 371 62.8
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.3e-125 453.0 385 61.6
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.6e-125 451.4 324 71.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-124 450.7 383 61.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.5e-124 449.5 348 67.0
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.2e-123 447.2 363 64.7
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 2.0e-121 439.9 375 63.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 8.6e-117 424.5 324 69.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.1e-115 419.9 374 60.4
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 5.2e-114 415.2 375 57.3
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 2.0e-113 413.3 375 57.3
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 2.6e-113 412.9 373 58.4
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.2e-112 409.8 357 58.5
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.9e-112 409.5 357 58.8
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 4.9e-112 408.7 369 58.8
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 4.1e-111 405.6 377 57.0
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 4.1e-111 405.6 372 57.0
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 4.1e-111 405.6 392 57.4
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-110 404.1 369 58.3
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 7.8e-110 401.4 338 60.9
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.0e-109 401.0 358 58.9
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 5.1e-109 398.7 370 58.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.9e-108 396.7 374 56.7
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.5e-108 396.4 376 55.9
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 5.6e-108 395.2 381 54.9
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 9.6e-108 394.4 357 57.4
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.6e-107 393.7 383 54.8
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.4e-106 390.6 372 56.5
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.8e-106 390.2 358 54.5
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.8e-106 390.2 374 55.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.1e-106 389.4 413 52.3
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 6.8e-106 388.3 381 54.3
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.9e-106 387.9 380 57.1
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.5e-105 387.1 380 57.1
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.5e-105 387.1 358 57.5
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.4e-105 386.0 368 55.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.4e-105 386.0 356 56.7
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 4.4e-105 385.6 379 54.6
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 5.8e-105 385.2 355 56.3
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 7.6e-105 384.8 358 56.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.7e-104 383.6 374 55.1
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.2e-104 383.3 376 56.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 4.9e-104 382.1 358 55.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 4.9e-104 382.1 385 54.5
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 8.4e-104 381.3 371 54.2
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.1e-103 380.9 372 54.8
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-103 380.9 381 53.3
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.1e-103 380.9 356 55.3
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-103 380.9 380 56.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.2e-103 379.4 359 54.9
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 3.2e-103 379.4 393 52.9
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 4.2e-103 379.0 382 52.9
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.2e-103 379.0 371 53.6
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 5.4e-103 378.6 371 54.4
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.6e-102 377.1 372 54.6
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.1e-102 376.7 357 55.5
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.3e-101 374.0 361 54.3
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 1.7e-101 373.6 360 55.0
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.3e-101 373.2 394 52.3
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 2.3e-101 373.2 372 52.4
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.0e-101 372.9 372 54.3
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 3.0e-101 372.9 389 50.6
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.9e-100 370.2 359 54.3
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.3e-100 369.0 394 51.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.6e-99 367.1 383 53.3
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 4.8e-99 365.5 353 53.3
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.1e-98 364.4 359 53.2
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.1e-98 362.8 395 51.6
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 5.3e-98 362.1 370 51.6
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 5.3e-98 362.1 388 51.8
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 9.0e-98 361.3 390 50.5
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.2e-97 360.9 360 52.8
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.5e-97 360.5 369 52.3
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.0e-97 360.1 364 51.6
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 4.4e-97 359.0 391 51.4
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 4.4e-97 359.0 384 50.3
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 5.8e-97 358.6 391 51.4
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.2e-96 356.7 389 50.6
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.9e-96 356.3 382 52.4
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.9e-96 356.3 357 51.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.8e-96 355.9 462 46.5
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 3.8e-96 355.9 334 56.3
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.4e-95 353.2 357 52.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.2e-95 352.4 355 53.0
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.2e-95 352.4 356 53.9
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.2e-94 350.9 392 50.0
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.6e-94 350.5 388 50.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 2.1e-94 350.1 382 50.5
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-93 347.4 392 50.0
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.3e-93 347.4 392 50.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 3.0e-93 346.3 362 51.9
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.9e-93 345.9 353 52.1
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.1e-93 345.5 352 52.0
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 8.7e-93 344.7 364 50.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.3e-91 340.9 376 51.1
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.8e-91 339.7 356 52.0
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.6e-91 339.3 374 52.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-91 339.3 411 48.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-91 339.3 411 48.4
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 3.6e-91 339.3 381 49.9
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.5e-89 334.0 367 52.0
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 4.5e-89 332.4 381 49.6
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.8e-88 329.3 376 50.0
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 4.9e-88 328.9 348 51.1
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.2e-87 326.2 311 55.0
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.2e-86 324.3 378 48.9
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.3e-85 320.1 367 51.0
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.1e-84 317.8 337 51.3
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.9e-84 317.0 368 48.9
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.8e-83 312.4 367 50.1
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 6.2e-83 312.0 368 47.8
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.1e-82 311.2 369 48.0
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.7e-80 303.9 368 46.7
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 8.4e-80 301.6 366 46.7
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 5.5e-79 298.9 245 60.0
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 7.9e-78 295.0 261 57.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.9e-77 292.7 271 54.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.0e-69 266.5 256 55.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-68 264.2 229 59.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.7e-67 259.6 287 50.9
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 8.2e-67 258.5 365 41.4
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.8e-66 257.3 252 53.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.6e-65 253.4 260 52.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.5e-65 252.7 364 40.9
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-63 247.3 276 50.0
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 9.4e-63 245.0 354 38.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.7e-62 243.4 241 52.3
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 4.8e-59 232.6 260 50.4
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 8.2e-59 231.9 228 52.6
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 2.6e-57 226.9 354 41.5
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 5.0e-56 222.6 403 35.2
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.5e-55 220.3 397 35.8
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.5e-47 193.7 189 55.0
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 4.7e-46 189.5 352 37.5
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 8.8e-45 185.3 156 57.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 2.5e-39 167.2 284 37.0
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.1e-34 150.2 341 34.0
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 6.8e-29 132.5 328 30.8
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 6.1e-22 109.4 229 34.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.0e-21 108.6 339 26.5
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 4.0e-21 106.7 229 34.1
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.1e-18 98.6 111 49.5
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.3e-16 91.7 64 68.8
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.0e-13 82.0 307 27.0
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.0e-13 82.0 68 58.8
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.1e-13 80.5 77 54.5
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 5.2e-13 79.7 77 54.5
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.0e-12 77.8 77 51.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.3e-11 75.1 92 43.5
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.2e-10 70.5 92 43.5
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.1e-10 70.1 55 56.4
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.9e-07 61.2 64 51.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.7e-06 56.6 58 46.6


User provided reference genes

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