Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 7.5e-156 553.9 297 100.0
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 1.3e-94 350.5 298 66.1
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 1.4e-93 347.1 305 65.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.4e-93 347.1 308 66.6
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-91 340.5 295 65.8
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-91 340.5 295 65.8
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 1.5e-84 317.0 300 63.7
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 6.7e-80 301.6 297 60.6
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 4.3e-79 298.9 281 65.1
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.2e-76 290.8 311 57.2
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 4.5e-76 288.9 298 60.4
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 2.4e-69 266.5 298 54.4
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 1.8e-61 240.4 310 48.4
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 6.5e-59 231.9 304 47.7
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.2e-57 227.6 299 46.2
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 3.1e-53 213.0 311 45.0
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 1.2e-49 201.1 315 42.9
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 6.1e-49 198.7 277 45.8
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.5e-47 194.1 319 42.0
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.2e-46 190.3 301 41.5
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 2.8e-46 189.9 311 41.8
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.4e-45 187.6 311 42.4
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.4e-45 187.6 312 41.7
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.8e-45 187.2 311 42.1
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.8e-45 187.2 311 42.1
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 2.4e-45 186.8 287 41.1
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.4e-45 186.8 312 42.0
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.2e-44 184.5 307 39.1
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 3.5e-44 183.0 296 48.3
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 7.7e-44 181.8 311 41.5
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.5e-42 177.6 271 40.2
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.5e-42 177.6 327 39.4
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 2.5e-42 176.8 293 43.7
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.6e-41 174.1 311 35.7
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 8.0e-41 171.8 305 40.0
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.5e-39 167.5 289 39.4
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.8e-38 163.3 300 37.7
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.1e-37 161.4 298 46.3
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.8e-37 160.6 294 39.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 9.1e-37 158.3 299 40.5
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 1.6e-36 157.5 261 43.7
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 3.5e-36 156.4 285 36.1
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 3.5e-36 156.4 302 39.7
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 3.5e-36 156.4 292 38.7
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 4.5e-36 156.0 264 43.2
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.5e-36 156.0 331 34.1
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.7e-35 154.1 306 36.9
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.2e-35 153.7 304 37.2
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.9e-35 153.3 306 36.9
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 5.0e-35 152.5 279 40.1
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.5e-34 150.2 307 35.2
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 2.1e-33 147.1 286 37.8
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.0e-33 145.2 275 36.7
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.4e-32 144.4 275 36.4
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 4.0e-32 142.9 309 36.9
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.5e-31 141.0 278 36.3
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 3.7e-30 136.3 300 34.0
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 1.4e-29 134.4 293 36.9
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 5.4e-29 132.5 321 34.9
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.5e-26 124.4 285 34.4
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 7.2e-26 122.1 273 34.1
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 8.0e-25 118.6 279 31.9
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 1.0e-24 118.2 281 33.1
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 1.8e-24 117.5 303 32.3
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 6.8e-24 115.5 286 33.6
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 2.6e-23 113.6 265 34.3
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.6e-23 113.6 290 32.8
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 1.7e-22 110.9 295 31.2
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 1.1e-21 108.2 254 34.6
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 1.1e-21 108.2 292 33.2
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 1.4e-21 107.8 294 31.6
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 4.1e-21 106.3 310 32.6
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 4.1e-21 106.3 292 31.8
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.7e-20 103.6 274 33.6
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 4.5e-20 102.8 304 30.9
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.0e-19 101.7 293 33.4
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.3e-19 101.3 293 29.4
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.3e-19 100.5 286 34.6
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 2.9e-19 100.1 296 29.4
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.9e-18 97.4 280 31.8
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 3.3e-18 96.7 249 30.9
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.6e-17 94.4 284 32.7
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 3.6e-17 93.2 281 30.6
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 8.0e-17 92.0 270 31.9
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.8e-16 90.9 92 53.3
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 4.4e-15 86.3 283 29.7
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 1.7e-14 84.3 278 32.4
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 2.9e-14 83.6 294 31.3
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 6.4e-14 82.4 288 30.6
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 8.3e-14 82.0 93 53.8
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.4e-13 81.3 311 30.5
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.9e-13 80.9 300 30.3
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 3.2e-13 80.1 291 29.6
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 4.1e-13 79.7 301 30.2
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 4.1e-13 79.7 277 37.2
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 5.4e-13 79.3 299 27.4
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 7.0e-13 79.0 285 30.2
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 1.6e-12 77.8 311 28.6
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.6e-12 77.8 310 28.7
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 2.7e-12 77.0 289 28.0
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 3.5e-12 76.6 278 30.9
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.6e-12 76.3 307 28.0
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.0e-12 75.9 207 31.9
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.0e-11 75.1 302 30.1
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.1e-10 71.6 305 28.2
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.1e-10 71.6 247 28.3
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 1.9e-10 70.9 299 30.1
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 4.3e-10 69.7 241 30.7
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 7.3e-10 68.9 299 27.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 9.5e-10 68.6 256 31.2
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 2.1e-09 67.4 174 29.9
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 3.6e-09 66.6 338 28.7
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 1.1e-08 65.1 282 26.6
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 1.8e-08 64.3 303 29.4
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 1.8e-08 64.3 344 27.9
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 2.3e-08 63.9 266 29.3
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.0e-08 63.2 66 50.0
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 6.8e-08 62.4 286 23.8
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 1.2e-07 61.6 253 30.0
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 1.5e-07 61.2 276 29.3
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 7.5e-07 58.9 330 24.8
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 1.3e-06 58.2 256 26.6
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 6.4e-06 55.8 146 31.5
Sed0003454 Sechium edule HOM05D000634 ORTHO05D028992 8.3e-06 55.5 238 29.8


User provided reference genes

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