Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.4e-158 563.1 330 100.0
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.6e-125 452.6 325 81.8
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 2.6e-125 452.6 327 81.7
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 2.2e-124 449.5 327 77.7
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 4.9e-124 448.4 327 79.2
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 8.4e-124 447.6 334 79.3
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 2.5e-120 436.0 334 78.1
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 4.3e-120 435.3 356 70.2
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 4.6e-114 415.2 327 76.1
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 3.0e-105 386.0 334 72.2
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 1.6e-103 380.2 327 69.4
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 2.0e-101 373.2 318 69.2
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 1.3e-100 370.5 323 68.7
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 2.9e-100 369.4 329 67.8
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 3.8e-100 369.0 321 70.7
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 8.4e-100 367.9 322 66.8
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 8.4e-100 367.9 320 65.0
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.1e-99 367.5 329 69.3
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 4.2e-99 365.5 317 68.8
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 9.3e-99 364.4 330 64.2
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 9.3e-99 364.4 317 69.4
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.2e-98 364.0 325 68.6
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 1.2e-98 364.0 329 66.3
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.6e-98 363.6 318 65.7
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 6.0e-98 361.7 317 68.8
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.0e-97 360.9 325 68.9
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 3.0e-97 359.4 323 65.0
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 3.0e-97 359.4 317 68.8
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 3.9e-97 359.0 326 68.1
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 8.7e-97 357.8 322 64.6
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.5e-96 357.1 325 66.5
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.5e-96 357.1 318 67.6
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.3e-96 355.9 318 67.9
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 5.7e-96 355.1 322 63.7
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 7.4e-96 354.8 331 61.6
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 9.6e-96 354.4 321 62.6
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 3.1e-94 349.4 320 66.2
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.2e-93 347.4 317 64.7
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 3.4e-93 345.9 320 65.6
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 1.1e-91 340.9 326 63.5
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 2.1e-90 336.7 332 59.6
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.3e-89 334.0 347 55.9
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 3.0e-89 332.8 347 55.9
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 3.9e-89 332.4 323 62.5
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 5.1e-89 332.0 322 63.0
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 6.7e-89 331.6 317 66.2
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 8.7e-89 331.3 324 62.3
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 8.7e-89 331.3 329 63.5
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 8.7e-89 331.3 328 63.1
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.5e-88 330.5 321 57.3
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 5.7e-88 328.6 322 64.3
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 7.4e-88 328.2 322 64.0
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 7.4e-88 328.2 323 63.8
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 9.7e-88 327.8 321 64.8
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.3e-87 327.4 322 62.7
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 2.2e-87 326.6 318 64.2
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 5.3e-86 322.0 322 63.0
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 6.9e-86 321.6 325 60.6
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 1.5e-85 320.5 327 61.5
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 1.5e-85 320.5 327 61.5
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 1.5e-85 320.5 328 60.4
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 3.4e-85 319.3 324 59.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 4.5e-85 318.9 322 63.0
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 7.7e-85 318.2 325 61.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.7e-84 317.0 325 60.9
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.7e-84 317.0 322 60.2
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 2.2e-84 316.6 329 60.8
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.9e-84 316.2 326 62.6
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 2.9e-84 316.2 316 63.6
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 2.9e-84 316.2 334 48.8
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 3.8e-84 315.8 314 62.4
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 3.2e-83 312.8 325 60.6
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 3.2e-83 312.8 324 59.9
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 5.5e-83 312.0 321 58.6
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 9.4e-83 311.2 327 60.2
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 9.4e-83 311.2 327 57.5
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 2.1e-82 310.1 319 61.8
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 2.1e-82 310.1 324 59.3
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 7.9e-82 308.1 324 56.8
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 5.1e-81 305.4 323 60.1
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.7e-79 300.4 170 84.1
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.2e-77 294.3 318 52.8
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.3e-76 290.8 323 59.1
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 5.0e-76 288.9 287 65.2
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.1e-75 287.7 323 58.5
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 7.2e-75 285.0 323 58.5
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 7.9e-74 281.6 320 55.9
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 3.9e-73 279.3 321 55.8
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 7.4e-72 275.0 319 58.6
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 7.4e-72 275.0 319 58.6
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 4.8e-71 272.3 319 57.4
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.4e-70 270.8 337 52.5
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 4.5e-69 265.8 325 55.1
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 1.8e-65 253.8 307 57.0
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.0e-65 253.1 172 66.3
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 2.0e-64 250.4 278 60.8
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.0e-64 250.4 330 42.1
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 8.2e-63 245.0 161 67.1
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.4e-62 243.4 159 67.3
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 5.9e-61 238.8 163 65.6
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.9e-60 236.5 173 61.8
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 9.4e-59 231.5 172 61.6
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 3.6e-58 229.6 322 52.8
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 3.0e-57 226.5 323 49.5
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 2.2e-55 220.3 325 44.6
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 6.3e-55 218.8 262 43.5
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 5.4e-54 215.7 163 62.6
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.0e-52 211.5 166 59.6
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 6.3e-47 192.2 190 50.0
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.1e-46 191.4 166 54.2
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 2.5e-43 180.3 168 51.8
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 9.2e-38 161.8 168 47.0
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.6e-37 159.5 191 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 5.8e-32 142.5 210 56.2
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 2.4e-30 137.1 346 37.3
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 2.7e-29 133.7 252 31.7
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 2.9e-23 113.6 92 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 6.4e-23 112.5 169 35.5
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.1e-22 111.7 102 53.9
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 2.4e-22 110.5 78 66.7
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.1e-22 109.0 350 27.7
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 3.0e-20 103.6 248 46.0
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.0e-20 103.6 73 63.0
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 6.8e-17 92.4 74 62.2
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 2.9e-15 87.0 60 65.0
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 3.5e-13 80.1 60 60.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 2.5e-11 73.9 125 34.4
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 3.3e-11 73.6 48 68.8
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 3.1e-09 67.0 154 35.1
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 5.2e-09 66.2 184 26.6
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 7.6e-08 62.4 58 53.4
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 1.9e-06 57.8 48 60.4


User provided reference genes

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