Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 0.0e+00 1473.4 750 100.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 7.5e-221 771.2 779 56.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.4e-213 745.7 775 55.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-208 730.7 753 56.3
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.7e-199 698.7 755 54.3
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.0e-193 681.0 760 52.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.3e-184 649.0 744 51.2
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 5.4e-179 632.1 873 44.6
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 2.1e-178 630.2 655 55.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 9.6e-176 621.3 702 51.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.1e-175 618.2 756 48.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.5e-173 614.0 763 48.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.4e-171 607.4 756 47.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.4e-164 581.6 661 50.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 8.2e-159 565.1 797 44.9
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.8e-158 563.9 715 48.4
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.8e-151 539.3 552 56.2
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.4e-149 533.1 785 41.4
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.8e-148 529.6 762 43.3
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 5.0e-148 529.3 787 41.6
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.7e-145 518.8 782 41.2
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 2.6e-144 516.9 784 40.9
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 4.4e-144 516.2 776 42.0
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-143 512.3 744 42.7
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.8e-140 503.1 767 41.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.1e-136 491.5 795 40.1
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-135 485.7 743 42.0
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.1e-130 470.7 757 41.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.7e-127 461.1 774 39.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 3.7e-127 459.9 766 39.8
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.4e-126 458.0 698 41.3
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 5.9e-125 452.6 764 38.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.5e-123 447.2 710 40.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 9.4e-123 445.3 797 37.6
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.0e-121 439.9 752 38.7
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 4.0e-121 439.9 771 38.7
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.8e-121 439.1 784 37.8
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 6.8e-121 439.1 715 40.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.7e-119 434.5 747 37.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.7e-119 433.3 757 38.0
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.8e-119 433.0 803 37.2
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 6.3e-119 432.6 710 38.6
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.1e-118 431.8 495 52.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.8e-118 431.0 753 37.3
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 2.0e-117 427.6 766 38.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.5e-117 426.8 760 37.4
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 4.5e-117 426.4 687 40.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 5.9e-117 426.0 751 37.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.1e-114 416.0 758 37.2
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.2e-112 411.8 787 35.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-111 408.3 804 35.1
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.2e-111 407.5 803 37.1
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 7.0e-110 402.5 780 35.8
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.3e-108 398.3 743 35.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 4.3e-107 393.3 749 35.8
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.7e-106 389.8 946 31.6
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.8e-105 387.9 856 33.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.8e-105 386.0 801 36.0
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 4.1e-102 376.7 322 59.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-101 375.2 352 56.8
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 2.0e-101 374.4 720 36.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.0e-100 372.1 797 34.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.3e-100 371.7 768 33.6
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 8.0e-98 362.5 807 34.4
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.4e-96 356.7 755 35.0
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.3e-95 355.1 471 44.8
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 4.9e-95 353.2 311 58.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.6e-93 348.2 755 35.0
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 4.6e-93 346.7 279 64.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-89 335.1 319 53.9
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.3e-89 334.3 635 35.0
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.0e-88 331.3 763 32.4
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.8e-88 329.7 314 55.4
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-87 326.6 326 51.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.1e-86 323.6 314 55.1
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 7.1e-86 322.8 757 32.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-85 322.0 345 52.2
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.6e-85 321.6 830 31.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 7.8e-85 319.3 753 31.2
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.9e-83 314.7 333 48.6
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.3e-83 313.9 741 32.3
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 4.3e-83 313.5 782 31.6
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 9.5e-83 312.4 743 31.8
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 4.7e-82 310.1 748 31.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.1e-81 308.9 744 31.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.8e-81 308.1 275 57.5
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.4e-81 307.8 743 32.7
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.1e-81 307.4 742 31.7
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 5.2e-81 306.6 740 31.2
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.9e-80 302.4 306 51.6
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.9e-79 300.8 736 31.0
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.9e-78 298.1 748 30.5
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 4.2e-78 297.0 843 28.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.2e-77 295.4 749 30.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.6e-77 295.0 748 30.9
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.3e-76 292.0 749 30.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.9e-76 290.4 752 31.0
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 5.1e-76 290.0 319 48.6
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 6.6e-76 289.7 393 46.6
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 6.6e-76 289.7 759 29.9
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 8.7e-76 289.3 321 47.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.1e-75 288.9 744 30.1
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.6e-74 285.0 751 31.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.4e-73 281.2 287 50.9
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.9e-71 274.2 316 47.5
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.1e-70 269.6 307 45.6
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.5e-67 261.9 269 51.7
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.8e-66 256.9 415 38.8
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.3e-65 253.4 739 29.0
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-64 252.3 310 46.5
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.2e-64 252.3 672 30.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 9.9e-64 249.2 837 28.7
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 9.9e-64 249.2 742 28.0
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-63 248.8 276 50.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.9e-63 247.7 224 54.5
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.4e-62 245.4 311 45.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 6.2e-58 229.9 324 42.9
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.7e-55 221.9 759 27.5
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.1e-54 219.2 561 32.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.2e-53 215.7 307 40.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.7e-53 214.5 235 46.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.8e-52 211.8 774 26.2
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-50 205.7 746 27.1
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 3.7e-50 204.1 271 43.2
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 6.2e-50 203.4 311 40.2
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.8e-47 194.1 674 30.9
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.3e-39 169.1 352 36.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-38 165.6 190 48.4
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.4e-38 165.6 190 48.4
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 7.2e-38 163.3 603 27.2
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.9e-36 157.5 165 47.3
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.4e-33 149.1 228 39.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.2e-30 137.9 124 57.3
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.0e-28 132.9 239 35.1
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.9e-28 131.0 132 51.5
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.3e-27 127.9 185 39.5
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 5.7e-27 127.1 188 39.9
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.8e-26 124.8 188 39.4
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 7.0e-25 120.2 173 40.5
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 7.0e-25 120.2 365 29.6
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 1.5e-24 119.0 206 36.4
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.5e-24 117.9 170 40.0
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 4.5e-24 117.5 171 38.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.5e-23 113.6 123 50.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.9e-22 112.1 125 49.6
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.5e-22 111.7 128 46.9
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 9.4e-22 109.8 176 36.4
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 5.2e-20 104.0 207 38.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.0e-19 102.1 131 44.3
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 4.5e-16 90.9 113 44.2
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.0e-15 89.7 141 40.4
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.1e-14 86.3 126 38.1
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 1.2e-13 82.8 184 34.2
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.0e-12 78.2 123 37.4
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 9.1e-09 66.6 63 54.0
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 4.5e-08 64.3 106 35.8
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-07 62.4 62 51.6
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 6.5e-07 60.5 50 58.0
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.5e-07 60.5 94 34.0


User provided reference genes

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