Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 4.2e-59 231.1 113 100.0
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 3.7e-31 138.3 113 68.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 6.3e-31 137.5 113 67.3
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.7e-29 132.1 88 73.9
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.7e-28 129.4 105 67.6
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.1e-27 126.7 113 57.5
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 7.3e-27 124.0 113 61.1
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.8e-26 122.1 90 66.7
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.1e-26 120.9 88 69.3
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.5e-24 116.3 89 69.7
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 3.4e-24 115.2 98 64.3
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 4.4e-24 114.8 98 66.3
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 6.4e-23 110.9 100 62.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 3.2e-22 108.6 87 64.4
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 7.0e-22 107.5 88 62.5
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.2e-21 106.7 87 63.2
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 7.8e-21 104.0 90 58.9
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 7.8e-21 104.0 91 60.4
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.3e-20 103.2 100 59.0
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.0e-20 102.1 87 60.9
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 6.6e-20 100.9 94 57.4
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 8.6e-20 100.5 89 58.4
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.1e-19 100.1 90 56.7
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 4.7e-18 94.7 87 57.5
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 4.7e-18 94.7 85 58.8
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 8.0e-18 94.0 85 58.8
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.3e-17 92.4 103 50.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.2e-17 91.3 95 50.5
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 9.8e-16 87.0 85 55.3
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.7e-15 86.3 82 54.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.9e-15 85.5 95 48.4
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 3.7e-15 85.1 92 52.2
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 3.7e-15 85.1 111 45.0
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.9e-15 84.7 92 52.2
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 8.3e-15 84.0 84 54.8
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.4e-14 83.2 84 54.8
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.4e-14 82.4 87 52.9
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.2e-14 82.0 84 50.0
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 5.4e-14 81.3 64 59.4
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 5.4e-14 81.3 78 52.6
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 5.4e-14 81.3 96 45.8
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 2.0e-13 79.3 79 50.6
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 4.6e-13 78.2 86 45.3
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.8e-13 77.4 102 42.2
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 1.7e-12 76.3 83 47.0
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.7e-12 76.3 88 47.7
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 2.3e-12 75.9 97 41.2
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.0e-12 75.5 76 44.7
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 3.0e-12 75.5 93 44.1
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 3.9e-12 75.1 82 50.0
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 6.6e-12 74.3 94 44.7
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 8.6e-12 73.9 82 51.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 1.5e-11 73.2 96 39.6
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.5e-11 73.2 91 44.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-11 72.4 57 63.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.3e-11 71.6 97 40.2
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 7.3e-11 70.9 47 68.1
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.3e-11 70.9 97 40.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 7.3e-11 70.9 97 40.2
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 9.5e-11 70.5 93 48.4
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 9.5e-11 70.5 89 40.4
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 9.5e-11 70.5 90 45.6
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-10 70.1 89 40.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.2e-10 70.1 63 50.8
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 2.1e-10 69.3 47 68.1
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.1e-10 69.3 82 48.8
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.8e-10 68.9 88 43.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.7e-10 68.2 89 39.3
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 4.7e-10 68.2 95 43.2
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 8.1e-10 67.4 85 41.2
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 8.1e-10 67.4 87 43.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.1e-09 67.0 93 41.9
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.4e-09 66.6 58 48.3
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.4e-09 66.6 92 46.7
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.4e-09 66.6 103 34.0
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 1.8e-09 66.2 109 35.8
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.3e-09 65.9 94 41.5
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 2.3e-09 65.9 85 38.8
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 2.3e-09 65.9 74 41.9
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.3e-09 65.9 65 46.2
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.3e-09 65.9 65 46.2
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.3e-09 65.9 86 40.7
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 3.1e-09 65.5 94 36.2
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 3.1e-09 65.5 92 39.1
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 5.2e-09 64.7 80 40.0
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 6.8e-09 64.3 95 38.9
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.2e-08 63.5 93 40.9
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 2.0e-08 62.8 87 37.9
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 2.0e-08 62.8 89 37.1
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.0e-08 62.8 94 41.5
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.6e-08 62.4 96 37.5
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.4e-08 62.0 65 41.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 4.4e-08 61.6 103 36.9
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 5.8e-08 61.2 83 39.8
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.8e-08 61.2 96 40.6
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 9.9e-08 60.5 80 36.2
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 1.3e-07 60.1 89 38.2
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 1.3e-07 60.1 74 40.5
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.7e-07 59.7 85 37.6
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 1.7e-07 59.7 79 41.8
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.2e-07 59.3 113 34.5
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.9e-07 58.9 109 35.8
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 3.7e-07 58.5 61 45.9
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 3.7e-07 58.5 88 36.4
Cpa.g.sc62.134 Carica papaya HOM05D007227 ORTHO05D002252 4.9e-07 58.2 70 38.6
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 8.3e-07 57.4 86 33.7
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 8.3e-07 57.4 82 36.6
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.1e-06 57.0 96 36.5
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.1e-06 57.0 96 36.5
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.1e-06 57.0 79 39.2
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 1.1e-06 57.0 93 34.4
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.4e-06 56.6 76 40.8
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.4e-06 56.6 104 36.5
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 2.4e-06 55.8 85 38.8
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.4e-06 55.8 84 33.3
Nitab4.5_0011008g0030 Nicotiana tabacum HOM05D007227 ORTHO05D002252 2.4e-06 55.8 79 38.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.4e-06 55.8 96 35.4
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 2.4e-06 55.8 111 36.0
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 3.2e-06 55.5 108 34.3
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.2e-06 55.5 98 34.7
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 3.2e-06 55.5 83 37.3
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.1e-06 55.1 104 35.6
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 5.4e-06 54.7 107 31.8
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 5.4e-06 54.7 104 35.6
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.4e-06 54.7 104 34.6
Cfa007848 Carpinus fangiana HOM05D033200 ORTHO05D022252 9.2e-06 53.9 69 39.1
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 9.2e-06 53.9 99 36.4
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 9.2e-06 53.9 114 32.5


User provided reference genes

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