Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0002274 Lotus japonicus HOM05D000147 ORTHO05D025190 2.1e-231 805.4 439 100.0
LjContig00430g0004045 Lotus japonicus HOM05D000147 ORTHO05D025190 1.5e-200 703.0 388 99.5
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 6.8e-190 667.5 388 92.3
LjContig00460g0026987 Lotus japonicus HOM05D000147 ORTHO05D025190 6.8e-113 411.8 439 61.3
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 1.1e-86 324.7 325 59.7
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 1.4e-86 324.3 347 57.3
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 2.7e-85 320.1 359 58.2
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 3.0e-84 316.6 304 58.9
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 5.1e-84 315.8 351 55.8
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 1.1e-83 314.7 347 55.3
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 1.2e-82 311.2 369 54.2
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 8.1e-82 308.5 371 53.1
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 2.0e-80 303.9 385 51.4
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 4.6e-77 292.7 303 56.4
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 7.8e-77 292.0 345 52.5
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 7.8e-77 292.0 349 53.9
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 6.8e-73 278.9 367 50.1
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 1.6e-66 257.7 349 48.4
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 1.5e-64 251.1 322 49.4
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 5.8e-64 249.2 334 47.3
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 1.7e-63 247.7 362 43.9
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 4.9e-63 246.1 345 47.0
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 8.4e-63 245.4 341 47.2
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 2.4e-62 243.8 297 50.2
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 3.2e-62 243.4 362 43.6
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 5.4e-62 242.7 310 50.0
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 3.5e-61 240.0 332 46.1
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 6.0e-61 239.2 275 51.6
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 6.0e-61 239.2 371 42.9
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 7.9e-61 238.8 371 43.7
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 7.9e-61 238.8 314 46.2
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 1.0e-60 238.4 345 46.7
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 2.3e-60 237.3 314 46.5
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 3.9e-60 236.5 384 41.7
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 6.6e-60 235.7 311 46.3
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 6.6e-60 235.7 348 44.8
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 5.6e-59 232.6 308 47.4
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 1.6e-58 231.1 358 45.8
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 2.1e-58 230.7 315 46.3
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 2.8e-58 230.3 278 51.1
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 8.1e-58 228.8 341 44.3
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 1.4e-57 228.0 343 44.6
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 2.4e-57 227.3 308 45.5
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 5.3e-57 226.1 342 44.2
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 9.0e-57 225.3 351 44.2
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.2e-56 224.9 288 47.2
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 2.6e-56 223.8 370 42.2
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 2.6e-56 223.8 369 42.3
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 3.4e-56 223.4 332 43.4
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 1.7e-55 221.1 326 43.6
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 1.7e-55 221.1 373 42.6
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 1.7e-55 221.1 370 42.4
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 3.8e-55 219.9 371 42.0
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 8.4e-55 218.8 336 42.6
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 1.4e-54 218.0 358 41.9
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 2.4e-54 217.2 352 42.0
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 1.6e-53 214.5 317 43.8
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.6e-53 214.5 311 45.7
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 2.1e-53 214.2 309 45.6
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 2.1e-53 214.2 309 46.0
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 3.5e-53 213.4 356 40.4
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 4.6e-53 213.0 300 46.0
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 4.6e-53 213.0 370 42.2
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 6.0e-53 212.6 382 40.6
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 1.0e-52 211.8 329 41.3
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 3.0e-52 210.3 337 43.3
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 3.9e-52 209.9 372 40.6
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 3.9e-52 209.9 249 51.0
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 3.9e-52 209.9 275 46.2
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 6.7e-52 209.1 363 40.2
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 1.1e-51 208.4 300 45.3
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 1.9e-51 207.6 280 45.7
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 2.5e-51 207.2 372 40.6
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 3.3e-51 206.8 344 39.8
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 7.4e-51 205.7 268 47.0
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 7.4e-51 205.7 280 43.6
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 9.6e-51 205.3 296 45.3
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 1.5e-48 198.0 366 40.7
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 2.6e-48 197.2 320 42.5
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 3.4e-48 196.8 297 43.8
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 5.8e-48 196.1 339 41.6
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 1.0e-47 195.3 346 40.5
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 3.8e-47 193.4 211 54.0
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 1.9e-46 191.0 326 41.1
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 7.1e-46 189.1 339 38.9
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 2.7e-45 187.2 328 39.9
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 3.5e-45 186.8 367 37.6
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 4.6e-45 186.4 324 40.7
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 3.0e-44 183.7 353 39.7
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 3.9e-44 183.3 299 39.8
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 3.9e-44 183.3 422 34.8
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 8.7e-44 182.2 313 41.2
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 2.5e-43 180.6 333 40.2
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 3.3e-43 180.3 358 39.1
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 4.3e-43 179.9 253 42.3
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 6.2e-42 176.0 366 38.0
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 1.1e-41 175.3 347 37.8
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 2.4e-41 174.1 372 38.7
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.4e-41 174.1 357 39.2
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 3.1e-41 173.7 362 37.6
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 3.1e-41 173.7 358 38.3
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 4.1e-41 173.3 420 37.4
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 5.3e-41 172.9 362 37.3
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 6.9e-41 172.6 359 37.0
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 6.9e-41 172.6 362 37.3
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 6.9e-41 172.6 362 37.3
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 6.9e-41 172.6 355 38.3
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 1.5e-40 171.4 245 42.0
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 2.0e-40 171.0 372 39.2
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 2.6e-40 170.6 344 37.2
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 2.6e-40 170.6 359 37.3
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 2.6e-40 170.6 196 51.0
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 2.2e-39 167.5 402 35.6
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 2.2e-39 167.5 296 40.2
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 1.1e-38 165.2 318 37.7
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 1.2e-37 161.8 307 38.8
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 1.6e-37 161.4 323 36.8
Haze_11747 Corylus avellana HOM05D000147 ORTHO05D025190 7.9e-37 159.1 140 60.7
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 3.9e-36 156.8 273 39.9
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 3.3e-35 153.7 224 43.8
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 2.8e-34 150.6 311 37.3
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 4.8e-34 149.8 228 44.3
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 8.2e-34 149.1 320 35.9
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 8.5e-31 139.0 190 41.1
Sabra07G0057300 Salix brachista HOM05D000147 ORTHO05D005311 1.4e-28 131.7 214 43.0
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 2.2e-26 124.4 217 38.7
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 2.2e-26 124.4 216 37.5
Lsat_1_v5_gn_5_32401 Lactuca sativa HOM05D000147 ORTHO05D005311 9.1e-25 119.0 172 41.3
Lsat_1_v5_gn_3_18480 Lactuca sativa HOM05D000147 ORTHO05D005311 5.9e-24 116.3 179 40.8
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 6.5e-23 112.8 332 33.1
Pp3c5_8900 Physcomitrium patens HOM05D000147 ORTHO05D005311 6.7e-20 102.8 352 29.8
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 2.1e-13 81.3 129 42.6
Mapoly0092s0039 Marchantia polymorpha HOM05D000147 ORTHO05D005311 1.1e-09 68.9 385 27.3
Pp3c18_15920 Physcomitrium patens HOM05D000147 ORTHO05D005311 3.5e-08 63.9 142 30.3
Lsat_1_v5_gn_8_102480 Lactuca sativa HOM05D001455 ORTHO05D005311 2.9e-07 60.8 86 41.9


User provided reference genes

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