Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.4e-101 371.7 191 100.0
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 9.9e-61 237.3 188 68.1
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 2.4e-59 232.6 188 67.6
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.1e-56 223.8 188 64.4
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.1e-56 223.8 189 65.6
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.6e-55 219.9 188 62.2
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 4.8e-55 218.4 186 62.9
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 2.7e-50 202.6 182 61.0
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 1.0e-49 200.7 187 56.7
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 3.9e-49 198.7 180 58.3
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 8.7e-49 197.6 188 58.5
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 2.5e-48 196.1 180 59.4
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 3.3e-48 195.7 183 60.1
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 4.3e-48 195.3 185 54.1
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 2.1e-47 193.0 185 54.1
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.8e-47 192.6 181 56.4
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 2.8e-47 192.6 186 56.5
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 2.8e-47 192.6 186 58.1
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 3.7e-47 192.2 181 55.8
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 6.3e-47 191.4 180 56.1
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.2e-47 191.0 187 57.2
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.4e-46 190.3 186 55.4
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 1.4e-46 190.3 180 55.6
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.8e-46 189.9 186 55.4
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 1.8e-46 189.9 186 53.2
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 3.1e-46 189.1 186 55.9
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 6.9e-46 188.0 185 52.4
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 1.5e-45 186.8 203 52.7
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 1.1e-43 180.6 185 53.5
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 1.9e-43 179.9 180 55.6
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 7.2e-43 177.9 180 52.8
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 1.6e-42 176.8 181 51.4
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.0e-41 174.1 181 53.0
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 1.0e-41 174.1 181 54.7
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.8e-41 173.3 180 50.6
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.8e-41 173.3 186 52.7
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 2.3e-41 172.9 180 51.7
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 6.7e-41 171.4 187 52.9
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 6.7e-41 171.4 180 50.6
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 8.7e-41 171.0 181 49.7
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 8.7e-41 171.0 187 52.9
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 8.7e-41 171.0 186 52.2
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 8.7e-41 171.0 186 51.6
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.5e-40 170.2 188 50.0
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.5e-40 170.2 188 50.0
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 1.9e-40 169.9 180 48.9
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.9e-40 169.9 187 52.4
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.9e-40 169.9 186 52.2
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 2.5e-40 169.5 192 52.6
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 4.3e-40 168.7 185 51.4
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 4.3e-40 168.7 186 50.5
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 5.7e-40 168.3 187 52.4
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 5.7e-40 168.3 182 48.9
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 9.7e-40 167.5 185 51.4
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 9.7e-40 167.5 185 51.4
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 1.3e-39 167.2 187 48.1
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 1.3e-39 167.2 186 50.5
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 1.6e-39 166.8 183 49.7
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 1.6e-39 166.8 183 50.8
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 2.2e-39 166.4 185 50.3
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 2.2e-39 166.4 189 51.9
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 3.7e-39 165.6 190 50.5
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.7e-39 165.6 186 51.1
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 8.2e-39 164.5 185 48.6
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.4e-38 163.7 183 51.9
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 2.4e-38 162.9 180 47.8
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 2.4e-38 162.9 201 48.3
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 2.4e-38 162.9 184 48.9
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.4e-38 162.9 184 48.9
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 3.1e-38 162.5 202 47.5
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 4.1e-38 162.2 181 50.3
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 4.1e-38 162.2 177 50.8
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 4.1e-38 162.2 189 50.3
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 6.9e-38 161.4 180 52.2
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 2.0e-37 159.8 180 48.3
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 2.6e-37 159.5 186 50.5
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.7e-37 157.9 184 48.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 7.7e-37 157.9 185 47.0
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 2.2e-36 156.4 186 46.8
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 2.9e-36 156.0 188 49.5
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 6.5e-36 154.8 203 45.3
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 3.2e-35 152.5 186 45.7
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 4.2e-35 152.1 187 48.1
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 1.2e-34 150.6 189 50.3
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 1.2e-34 150.6 200 44.5
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 3.6e-34 149.1 186 46.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.4e-33 147.1 173 49.1
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 2.3e-33 146.4 165 52.7
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 5.1e-33 145.2 159 47.8
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.6e-32 142.9 193 44.6
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.3e-31 140.6 195 45.1
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 2.8e-31 139.4 180 47.2
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.4e-30 137.1 153 51.6
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.8e-30 136.7 158 49.4
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 3.1e-30 136.0 189 46.6
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 4.1e-30 135.6 152 50.0
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 2.0e-29 133.3 191 47.6
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 4.5e-29 132.1 183 43.2
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 7.7e-29 131.3 180 44.4
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 5.0e-28 128.6 180 42.8
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.9e-27 126.7 155 49.0
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 2.0e-24 116.7 185 42.7
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 3.7e-23 112.5 125 48.8
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 1.1e-22 110.9 166 43.4
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 3.2e-19 99.4 118 47.5
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.6e-18 95.9 158 35.4
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.2e-13 80.9 164 35.4
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 1.6e-13 80.5 106 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 2.7e-13 79.7 163 29.4
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.0e-12 77.8 192 33.3
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 8.5e-12 74.7 192 31.8
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 1.5e-11 73.9 181 31.5
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 1.9e-11 73.6 61 59.0
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.9e-11 73.6 180 31.7
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 2.0e-08 63.5 54 53.7
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.7e-07 60.5 78 43.6
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 3.7e-07 59.3 77 45.5


User provided reference genes

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