Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 6.4e-243 843.6 401 100.0
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 3.3e-191 671.8 400 78.0
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.3e-187 659.8 401 75.3
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 2.5e-186 655.6 399 74.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.2e-185 653.3 400 74.8
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.6e-185 652.9 402 74.1
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.1e-185 652.5 400 73.8
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.7e-185 652.1 404 75.2
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 2.7e-185 652.1 402 73.9
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 7.9e-185 650.6 400 74.0
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-184 649.8 404 74.8
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-184 649.8 404 74.8
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-184 649.8 404 75.0
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.8e-184 649.4 404 75.0
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.3e-184 649.0 400 73.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 3.9e-184 648.3 400 75.2
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 3.9e-184 648.3 400 72.8
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.1e-184 647.9 404 74.5
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 6.7e-184 647.5 403 74.9
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.7e-184 647.1 404 74.8
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.7e-184 647.1 404 74.8
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.1e-183 646.7 400 74.0
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.9e-183 646.0 400 74.2
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-183 645.2 404 74.5
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 4.3e-183 644.8 404 72.5
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.4e-183 644.0 404 74.5
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.4e-183 644.0 404 74.5
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.6e-182 642.9 400 74.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.2e-182 642.5 395 75.2
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 2.8e-182 642.1 396 74.2
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.7e-182 641.7 404 74.3
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.3e-182 641.0 404 74.3
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.4e-181 639.0 400 73.0
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 2.4e-181 639.0 400 74.2
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 2.0e-180 636.0 399 72.4
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 3.4e-180 635.2 398 73.6
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.4e-180 635.2 399 72.9
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 3.4e-180 635.2 400 73.8
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 5.9e-180 634.4 402 72.4
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 2.5e-178 629.0 401 73.1
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 5.5e-178 627.9 396 73.0
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 2.1e-177 625.9 396 73.2
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 4.6e-177 624.8 395 73.7
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 7.9e-177 624.0 398 72.1
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.8e-176 622.9 399 71.4
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 3.9e-176 621.7 400 71.8
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 3.9e-176 621.7 398 71.9
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 1.5e-175 619.8 398 72.1
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 3.3e-175 618.6 398 70.6
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 5.7e-175 617.8 353 80.5
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 7.4e-175 617.5 395 72.4
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 9.7e-175 617.1 398 72.1
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 4.8e-174 614.8 400 71.5
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.4e-173 613.2 399 70.9
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 4.1e-173 611.7 397 68.8
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 5.3e-173 611.3 375 73.1
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 6.9e-173 610.9 391 72.1
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.0e-171 607.1 402 70.9
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 1.7e-171 606.3 398 70.9
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 6.5e-171 604.4 391 70.8
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 6.5e-171 604.4 398 68.3
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.4e-170 603.2 398 70.1
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 7.2e-170 600.9 398 69.8
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 9.4e-170 600.5 403 70.2
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 1.6e-169 599.7 370 73.8
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 2.7e-169 599.0 399 68.7
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 6.1e-169 597.8 402 69.9
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 1.0e-168 597.0 398 68.8
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.0e-168 597.0 403 67.2
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-168 596.7 397 69.8
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 2.3e-168 595.9 398 69.1
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 3.0e-168 595.5 400 68.0
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 3.0e-168 595.5 400 68.2
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 3.0e-168 595.5 397 70.0
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 3.9e-168 595.1 401 69.6
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 5.7e-167 591.3 358 74.6
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 7.4e-167 590.9 368 72.8
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 5.3e-165 584.7 399 68.7
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 9.1e-165 583.9 399 68.4
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 6.5e-163 577.8 399 67.4
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 4.0e-160 568.5 349 75.4
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 6.7e-160 567.8 403 65.3
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 8.8e-160 567.4 397 68.3
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.4e-157 560.1 399 66.7
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 7.0e-157 557.8 398 64.1
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.4e-151 538.9 349 69.6
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.7e-150 536.6 407 62.4
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 1.5e-146 523.5 411 61.8
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 8.0e-145 517.7 390 63.3
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.4e-144 516.9 404 59.9
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 5.0e-139 498.4 399 61.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.0e-131 472.6 391 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 6.2e-129 464.9 392 58.4
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 5.2e-128 461.8 291 73.5
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 2.2e-118 429.9 351 61.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.9e-115 419.1 326 62.6
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 6.6e-107 391.7 399 49.6
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.9e-93 347.1 284 58.8
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.0e-91 339.7 209 74.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 3.8e-86 322.8 421 43.0
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.0e-80 302.8 430 39.1
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 5.9e-71 272.3 449 38.1
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 7.4e-66 255.4 308 44.2
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 5.5e-61 239.2 159 65.4
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-60 238.0 398 37.9
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 1.2e-39 168.3 125 59.2
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.0e-39 167.5 408 29.4
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 2.9e-30 137.1 317 31.9
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.5e-29 134.8 100 67.0
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.9e-21 107.8 296 29.4
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 4.9e-17 93.2 69 63.8
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 8.6e-14 82.4 58 62.1
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 2.0e-07 61.2 78 43.6


User provided reference genes

Program Settings