Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.3e-107 391.7 199 100.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.1e-53 211.5 185 62.2
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.3e-52 209.5 200 59.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.8e-49 199.9 199 53.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.9e-48 194.9 193 56.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 2.2e-47 193.0 194 56.7
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 5.0e-47 191.8 146 69.2
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 8.5e-47 191.0 192 55.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 2.5e-46 189.5 199 54.8
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 4.2e-46 188.7 173 56.1
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 5.5e-46 188.3 207 52.2
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.7e-45 186.0 199 53.8
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.6e-45 185.7 204 53.4
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 8.0e-45 184.5 208 49.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 6.7e-44 181.4 155 59.4
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 2.0e-43 179.9 202 52.0
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 2.6e-43 179.5 205 48.8
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.8e-42 176.0 141 63.8
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.8e-42 176.0 135 63.0
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 8.2e-42 174.5 139 60.4
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.8e-41 173.3 179 52.5
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.8e-41 173.3 202 51.5
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 9.1e-41 171.0 178 53.9
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.2e-40 170.6 207 49.8
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.2e-40 170.6 206 48.5
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.7e-40 169.5 151 58.9
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 3.5e-40 169.1 171 53.2
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 5.9e-40 168.3 133 60.2
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 7.7e-40 167.9 203 52.2
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.0e-39 167.5 209 51.2
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 1.3e-39 167.2 178 52.2
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.7e-39 166.8 144 55.6
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 2.2e-39 166.4 209 47.4
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 2.2e-39 166.4 195 50.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.9e-39 166.0 215 49.3
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.9e-39 166.0 177 54.2
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.8e-39 165.6 154 57.1
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 6.5e-39 164.9 201 49.8
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.1e-38 164.1 207 49.3
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.5e-38 163.7 166 51.8
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-38 163.3 149 58.4
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.9e-38 163.3 210 49.5
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.9e-38 163.3 140 60.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.9e-38 163.3 201 47.3
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 3.2e-38 162.5 161 54.7
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 7.2e-38 161.4 148 57.4
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.6e-37 160.2 152 55.9
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 2.1e-37 159.8 211 46.0
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.1e-37 159.8 182 51.1
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 2.1e-37 159.8 186 47.3
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.7e-37 159.5 153 53.6
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 3.6e-37 159.1 194 46.9
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.6e-37 159.1 145 59.3
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 4.7e-37 158.7 165 50.9
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.2e-36 155.2 120 64.2
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 5.2e-36 155.2 142 54.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.5e-35 153.7 197 43.7
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 9.8e-35 151.0 172 50.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.3e-34 150.6 187 46.0
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.8e-33 146.7 149 50.3
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.2e-30 136.0 173 45.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 5.5e-30 135.2 158 50.0
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 7.2e-30 134.8 93 69.9
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 7.2e-30 134.8 139 51.8
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 9.5e-30 134.4 157 49.0
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-29 133.7 158 49.4
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-29 133.7 158 49.4
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.1e-29 133.3 151 47.7
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 3.6e-29 132.5 158 48.1
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.7e-29 132.1 153 47.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.7e-29 132.1 172 48.3
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 8.0e-29 131.3 177 42.9
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-28 130.2 152 47.4
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 1.8e-28 130.2 201 43.8
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.3e-28 129.8 125 52.8
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.8e-28 128.3 201 42.3
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 6.8e-28 128.3 189 43.4
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.4e-25 118.6 197 35.5
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 2.9e-23 112.8 150 40.0
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 5.0e-23 112.1 154 42.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.5e-22 110.5 161 38.5
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.5e-22 110.5 122 46.7
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 3.3e-22 109.4 159 37.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 3.3e-22 109.4 160 38.8
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 4.3e-22 109.0 151 40.4
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.1e-21 106.7 149 40.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.1e-21 106.7 150 38.7
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 6.1e-21 105.1 125 43.2
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.0e-20 104.4 161 37.3
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.0e-20 104.4 161 37.3
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.8e-20 103.6 124 40.3
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 2.3e-20 103.2 165 37.6
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 3.0e-20 102.8 100 56.0
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 5.2e-20 102.1 118 43.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 6.8e-20 101.7 124 42.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 6.8e-20 101.7 124 42.7
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 8.9e-20 101.3 77 63.6
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.5e-19 100.5 158 38.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.0e-19 100.1 122 41.8
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 2.6e-19 99.8 130 40.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 5.7e-19 98.6 124 37.1
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.7e-19 98.6 156 37.2
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 5.7e-19 98.6 125 40.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 9.8e-19 97.8 121 40.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.7e-18 97.1 121 40.5
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.7e-18 97.1 143 41.3
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.9e-18 96.3 122 38.5
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.7e-18 95.9 118 43.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.7e-18 95.9 114 44.7
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 6.4e-18 95.1 121 39.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-17 94.4 121 39.7
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-17 94.0 121 39.7
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.4e-17 94.0 124 41.1
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.8e-17 93.6 127 39.4
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.8e-17 93.6 122 42.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.8e-17 93.6 124 37.9
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.8e-17 93.6 121 39.7
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.4e-17 93.2 121 38.0
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.2e-17 92.8 123 39.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 3.2e-17 92.8 121 38.8
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 3.2e-17 92.8 121 38.8
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.1e-17 92.4 126 36.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.0e-17 91.7 122 35.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 7.0e-17 91.7 122 36.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 7.0e-17 91.7 122 42.6
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.6e-16 90.5 124 37.9
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.6e-16 90.5 123 39.8
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.6e-16 89.0 122 39.3
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 4.6e-16 89.0 120 39.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 5.9e-16 88.6 121 37.2
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 5.9e-16 88.6 154 34.4
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 7.8e-16 88.2 124 39.5
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.0e-15 87.8 121 36.4
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 1.7e-15 87.0 154 33.8
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-15 87.0 153 31.4
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.3e-15 86.7 144 37.5
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 3.0e-15 86.3 124 37.9
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 5.0e-15 85.5 122 36.9
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-14 84.3 121 38.0
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.1e-14 84.3 121 38.0
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-14 84.0 121 38.0
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-14 84.0 121 38.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 2.5e-14 83.2 136 35.3
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.5e-14 83.2 136 35.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.5e-14 83.2 87 41.4
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.6e-14 82.0 118 38.1
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 9.5e-14 81.3 99 35.4
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.1e-13 80.1 121 32.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.6e-13 79.3 105 37.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 8.0e-13 78.2 125 35.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.8e-12 77.0 121 31.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.1e-12 76.3 130 30.8
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 6.8e-12 75.1 90 41.1
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-11 73.9 78 42.3
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 4.4e-11 72.4 119 36.1
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 2.2e-10 70.1 78 39.7
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 5.4e-09 65.5 50 64.0
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.3e-07 60.8 89 37.1
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.3e-07 60.8 75 41.3
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 6.6e-07 58.5 60 43.3
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 8.6e-07 58.2 201 26.9
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 9.5e-06 54.7 82 35.4


User provided reference genes

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