Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P850T49 Lonicera japonica HOM05D000576 ORTHO05D000368 1.9e-71 272.3 132 100.0
Lj5A109G69 Lonicera japonica HOM05D000576 ORTHO05D000368 4.6e-65 251.1 131 91.6
Lj5A369G34 Lonicera japonica HOM05D000576 ORTHO05D000368 1.9e-31 139.4 132 55.3
Lj8A85G34 Lonicera japonica HOM05D000576 ORTHO05D000368 1.9e-31 139.4 128 54.7
Lj2A751T36 Lonicera japonica HOM05D000576 ORTHO05D000368 4.8e-30 134.8 130 53.8
Lj5A109G71 Lonicera japonica HOM05D000576 ORTHO05D000368 8.2e-30 134.0 82 76.8
Lj2A749T20 Lonicera japonica HOM05D000576 ORTHO05D000368 3.1e-29 132.1 129 51.2
Lj4A675G49 Lonicera japonica HOM05D000576 ORTHO05D000368 4.1e-29 131.7 129 53.5
Lj4A677G34 Lonicera japonica HOM05D000576 ORTHO05D000368 7.7e-28 127.5 125 52.8
Lj1A1065T49 Lonicera japonica HOM05D000576 ORTHO05D000368 2.7e-25 119.0 125 48.8
Lj5A96T52 Lonicera japonica HOM05D000576 ORTHO05D000368 6.1e-25 117.9 113 52.2
Lj7A319T20 Lonicera japonica HOM05D000576 ORTHO05D000368 1.0e-24 117.1 125 48.8
Lj5A97T93 Lonicera japonica HOM05D000576 ORTHO05D000368 1.4e-24 116.7 125 48.8
Lj9A565T43 Lonicera japonica HOM05D000576 ORTHO05D000368 1.8e-24 116.3 126 46.0
Lj9A566T51 Lonicera japonica HOM05D000576 ORTHO05D000368 6.7e-24 114.4 126 47.6
Lj1P555T10 Lonicera japonica HOM05D000576 ORTHO05D000368 8.8e-24 114.0 135 47.4
Lj7A332T19 Lonicera japonica HOM05D000576 ORTHO05D000368 1.1e-23 113.6 125 48.0
Lj7A334T37 Lonicera japonica HOM05D000576 ORTHO05D000368 1.1e-23 113.6 125 48.0
Lj5A569T31 Lonicera japonica HOM05D000576 ORTHO05D000368 2.0e-23 112.8 127 47.2
Lj9A566G48 Lonicera japonica HOM05D000576 ORTHO05D000368 3.3e-23 112.1 126 47.6
Lj7A552T59 Lonicera japonica HOM05D000576 ORTHO05D000368 9.7e-23 110.5 124 46.8
Lj9A559T48 Lonicera japonica HOM05D000576 ORTHO05D000368 2.2e-22 109.4 128 45.3
Lj2C751G2 Lonicera japonica HOM05D000576 ORTHO05D000368 3.7e-22 108.6 124 50.0
Lj4C517T4 Lonicera japonica HOM05D000576 ORTHO05D000368 3.7e-22 108.6 138 45.7
Dinv26720 Davidia involucrata HOM05D000576 ORTHO05D000368 4.1e-21 105.1 127 46.5
Lj4A510T17 Lonicera japonica HOM05D000576 ORTHO05D000368 1.0e-19 100.5 155 40.6
Dinv01310 Davidia involucrata HOM05D000576 ORTHO05D000368 5.0e-19 98.2 127 44.9
Lj5A147T41 Lonicera japonica HOM05D000576 ORTHO05D000368 2.5e-18 95.9 103 54.4
Lj5A103G57 Lonicera japonica HOM05D000576 ORTHO05D000368 1.6e-17 93.2 99 52.5
Dinv04865 Davidia involucrata HOM05D000576 ORTHO05D000368 2.7e-17 92.4 98 49.0
Hma1.2p1_0183F.1_g081070 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 1.4e-16 90.1 125 43.2
Dinv38537 Davidia involucrata HOM05D000111 ORTHO05D000134 1.8e-16 89.7 123 40.7
Dinv20101 Davidia involucrata HOM05D000576 ORTHO05D000368 2.3e-16 89.4 105 46.7
Dinv38504 Davidia involucrata HOM05D000576 ORTHO05D000368 3.9e-16 88.6 116 43.1
QL10p005342 Quercus lobata HOM05D000576 ORTHO05D000368 3.9e-16 88.6 104 45.2
Dinv11146 Davidia involucrata HOM05D000576 ORTHO05D000368 6.7e-16 87.8 131 42.0
Migut.F00694 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.3e-15 85.5 113 44.2
Cfa013470 Carpinus fangiana HOM05D000576 ORTHO05D000368 4.4e-15 85.1 127 43.3
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 5.7e-15 84.7 127 39.4
ClCG06G017710 Citrullus lanatus HOM05D000576 ORTHO05D000368 1.3e-14 83.6 113 39.8
vmacro18523 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 6.3e-14 81.3 124 39.5
HanXRQChr08g0221771 Helianthus annuus HOM05D000576 ORTHO05D000368 1.1e-13 80.5 113 44.2
VMungo1215G3115 Vigna mungo HOM05D000576 ORTHO05D000368 3.1e-13 79.0 124 37.9
CsaV3_1G000750 Cucumis sativus L. HOM05D000576 ORTHO05D000368 7.0e-13 77.8 113 38.1
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 7.0e-13 77.8 110 41.8
QL03p059577 Quercus lobata HOM05D000576 ORTHO05D000368 7.0e-13 77.8 104 42.3
QL10p005853 Quercus lobata HOM05D000576 ORTHO05D000368 7.0e-13 77.8 106 40.6
ECA233G4739 Erigeron canadensis HOM05D000576 ORTHO05D000368 9.1e-13 77.4 106 46.2
Phvul.003G209900 Phaseolus vulgaris HOM05D000576 ORTHO05D000368 9.1e-13 77.4 124 38.7
MSTRG.8963 Avicennia marina HOM05D000576 ORTHO05D000368 1.2e-12 77.0 103 43.7
TWI32G0666 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.2e-12 77.0 133 39.1
Dinv38535 Davidia involucrata HOM05D000576 ORTHO05D000368 1.6e-12 76.6 119 39.5
MELO3C026220.2 Cucumis melo HOM05D000576 ORTHO05D000368 2.0e-12 76.3 113 38.9
TWI18G0091 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.6e-12 75.9 124 38.7
Lj2A748G15 Lonicera japonica HOM05D000576 ORTHO05D025766 1.7e-11 73.2 88 47.7
SGA_v2.0_scaffold44G16702 Striga asiatica HOM05D000576 ORTHO05D000368 1.7e-11 73.2 103 41.7
Peaxi162Scf00310g00017 Petunia axillaris HOM05D000576 ORTHO05D000368 2.2e-11 72.8 116 34.5
TWI63G0411 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.2e-11 72.8 110 41.8
TWI63G0561 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.2e-11 72.8 125 36.0
COL.COLO4_14292 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.8e-11 72.0 120 35.0
Prupe.1G496400 Prunus persica HOM05D000576 ORTHO05D000368 3.8e-11 72.0 104 37.5
COL.COLO4_14986 Corchorus olitorius HOM05D000576 ORTHO05D000368 5.0e-11 71.6 120 35.0
Ciclev10011606m.g Citrus clementina HOM05D000576 ORTHO05D000368 6.5e-11 71.2 119 35.3
Ciclev10011607m.g Citrus clementina HOM05D000576 ORTHO05D000368 6.5e-11 71.2 119 35.3
Peaxi162Scf00041g00112 Petunia axillaris HOM05D000576 ORTHO05D000368 6.5e-11 71.2 111 35.1
COL.COLO4_25983 Corchorus olitorius HOM05D000576 ORTHO05D000368 8.5e-11 70.9 115 37.4
Cc10_g03840 Coffea canephora HOM05D000576 ORTHO05D000368 1.5e-10 70.1 131 32.1
Cc10_g03770 Coffea canephora HOM05D000576 ORTHO05D000368 2.5e-10 69.3 118 37.3
ECA232G4459 Erigeron canadensis HOM05D000576 ORTHO05D000368 3.2e-10 68.9 126 34.1
Migut.J00163 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.2e-10 68.6 105 34.3
Migut.O00221 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.2e-10 68.6 120 38.3
Cc10_g07420 Coffea canephora HOM05D000576 ORTHO05D000368 5.5e-10 68.2 101 36.6
Lj5E99T1 Lonicera japonica HOM05D000576 ORTHO05D000368 5.5e-10 68.2 73 47.9
COL.COLO4_02753 Corchorus olitorius HOM05D000576 ORTHO05D000368 7.2e-10 67.8 97 40.2
TWI73G0365 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 7.2e-10 67.8 99 41.4
Ah.08g220280 Amaranthus hybridus HOM05D000576 ORTHO05D000368 9.4e-10 67.4 123 36.6
Prupe.1G496200 Prunus persica HOM05D000576 ORTHO05D000368 9.4e-10 67.4 100 39.0
QL10p005093 Quercus lobata HOM05D000576 ORTHO05D000368 9.4e-10 67.4 112 38.4
TPR.G30007 Trifolium pratense HOM05D000576 ORTHO05D000368 9.4e-10 67.4 109 35.8
TWI63G1780 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 9.4e-10 67.4 108 40.7
TWI77G0108 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.2e-09 67.0 121 37.2
Thecc.03G058200 Theobroma cacao HOM05D000576 ORTHO05D000368 1.6e-09 66.6 107 36.4
TWI31G0199 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.6e-09 66.6 96 40.6
TWI63G1205 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.6e-09 66.6 116 39.7
Manes.03G198700 Manihot esculenta HOM05D000576 ORTHO05D000368 2.1e-09 66.2 133 33.8
Rhsim08G0187200 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.1e-09 66.2 164 29.9
RcHm_v2.0_Chr1g0330451 Rosa chinensis HOM05D000576 ORTHO05D000368 2.1e-09 66.2 107 37.4
TWI63G1035 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.1e-09 66.2 130 35.4
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.1e-09 66.2 125 35.2
Nitab4.5_0008827g0010 Nicotiana tabacum HOM05D000576 ORTHO05D000368 2.7e-09 65.9 118 33.1
QL04p071108 Quercus lobata HOM05D000576 ORTHO05D000368 2.7e-09 65.9 113 35.4
Hma1.2p1_0024F.1_g015920 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 3.6e-09 65.5 102 38.2
Hma1.2p1_2024F.1_g311420 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 3.6e-09 65.5 102 38.2
TWI63G0051 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.6e-09 65.5 124 33.1
TWI63G1662 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.6e-09 65.5 119 33.6
arahy.Tifrunner.gnm1.ann1.RZZ8M9 Arachis hypogaea HOM05D000576 ORTHO05D000368 6.1e-09 64.7 106 34.9
Gohir.D08G134100 Gossypium hirsutum HOM05D000576 ORTHO05D000368 6.1e-09 64.7 102 38.2
HanXRQChr09g0252871 Helianthus annuus HOM05D000576 ORTHO05D000368 6.1e-09 64.7 99 38.4
QL04p071180 Quercus lobata HOM05D000576 ORTHO05D000368 6.1e-09 64.7 114 36.8
TWI63G0014 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 8.0e-09 64.3 102 38.2
arahy.Tifrunner.gnm1.ann1.ZMI5M5 Arachis hypogaea HOM05D000576 ORTHO05D000368 1.0e-08 63.9 106 34.9
Gorai.004G137200 Gossypium raimondii HOM05D000576 ORTHO05D000368 1.0e-08 63.9 102 38.2
AUR62019287 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.4e-08 63.5 133 29.3
Cc09_g07080 Coffea canephora HOM05D000576 ORTHO05D000368 1.4e-08 63.5 115 35.7
Migut.G01093 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.4e-08 63.5 115 35.7
Lsat_1_v5_gn_9_62080 Lactuca sativa HOM05D000576 ORTHO05D000368 1.4e-08 63.5 108 34.3
Lj6P729T26 Lonicera japonica HOM05D000576 ORTHO05D013658 1.4e-08 63.5 85 45.9
PGSC0003DMG401027561 Solanum tuberosum HOM05D000576 ORTHO05D000368 1.4e-08 63.5 114 38.6
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-08 63.5 99 41.4
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-08 63.5 106 42.5
Cfa001772 Carpinus fangiana HOM05D000576 ORTHO05D000368 1.8e-08 63.2 105 38.1
Hund16546 Selenicereus undatus HOM05D000576 ORTHO05D000368 1.8e-08 63.2 131 33.6
COL.COLO4_29714 Corchorus olitorius HOM05D000576 ORTHO05D000368 2.3e-08 62.8 127 30.7
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.3e-08 62.8 109 34.9
Nitab4.5_0000099g0260 Nicotiana tabacum HOM05D000576 ORTHO05D000368 2.3e-08 62.8 122 29.5
Rhsim05G0090700 Rhododendron simsii HOM05D000576 ORTHO05D015329 2.3e-08 62.8 108 36.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.0e-08 62.4 99 35.4
Migut.G00965 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.0e-08 62.4 109 34.9
COL.COLO4_27089 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.0e-08 62.0 128 28.9
Glyma.17G128800 Glycine max HOM05D000576 ORTHO05D000368 5.2e-08 61.6 105 36.2
Gohir.A08G113400 Gossypium hirsutum HOM05D000576 ORTHO05D000368 5.2e-08 61.6 102 38.2
CSS0015792 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 6.7e-08 61.2 100 39.0
COL.COLO4_34465 Corchorus olitorius HOM05D000576 ORTHO05D000368 6.7e-08 61.2 139 33.1
Duzib177G0569 Durio zibethinus HOM05D000576 ORTHO05D000368 6.7e-08 61.2 125 33.6
ECA232G2100 Erigeron canadensis HOM05D000576 ORTHO05D000368 6.7e-08 61.2 108 33.3
Migut.J00569 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.7e-08 61.2 101 36.6
Rhsim02G0021500 Rhododendron simsii HOM05D000576 ORTHO05D000368 6.7e-08 61.2 129 33.3
PGSC0003DMG402009486 Solanum tuberosum HOM05D000576 ORTHO05D000368 6.7e-08 61.2 103 35.0
FAN20G1480 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.8e-08 60.8 107 35.5
Lj4g0012458 Lotus japonicus HOM05D000576 ORTHO05D000368 8.8e-08 60.8 106 34.9
Peaxi162Scf00066g01414 Petunia axillaris HOM05D000576 ORTHO05D000368 8.8e-08 60.8 125 34.4
Hund00349 Selenicereus undatus HOM05D000576 ORTHO05D000368 8.8e-08 60.8 97 34.0
AUR62019267 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.2e-07 60.5 127 29.9
Peaxi162Scf00045g01340 Petunia axillaris HOM05D000576 ORTHO05D000368 1.2e-07 60.5 125 35.2
Rhsim02G0051900 Rhododendron simsii HOM05D000576 ORTHO05D015329 1.2e-07 60.5 97 39.2
AUR62019288 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.5e-07 60.1 134 31.3
HanXRQChr09g0252251 Helianthus annuus HOM05D000576 ORTHO05D000368 2.0e-07 59.7 99 36.4
Lj1A1062T25 Lonicera japonica HOM05D000576 ORTHO05D000368 2.0e-07 59.7 46 54.3
PGR102G0550 Punica granatum HOM05D000576 ORTHO05D000368 2.0e-07 59.7 104 37.5
Cc03_g13650 Coffea canephora HOM05D000576 ORTHO05D000368 2.6e-07 59.3 112 35.7
Nitab4.5_0005673g0030 Nicotiana tabacum HOM05D000576 ORTHO05D000368 2.6e-07 59.3 121 29.8
PGSC0003DMG400017941 Solanum tuberosum HOM05D000576 ORTHO05D000368 2.6e-07 59.3 116 34.5
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.6e-07 59.3 101 36.6
QL10p005864 Quercus lobata HOM05D000576 ORTHO05D000368 3.3e-07 58.9 99 42.4
Ciclev10008358m.g Citrus clementina HOM05D000576 ORTHO05D000368 4.4e-07 58.5 94 35.1
COL.COLO4_27090 Corchorus olitorius HOM05D000576 ORTHO05D000368 5.7e-07 58.2 128 29.7
ECA238G1856 Erigeron canadensis HOM05D000576 ORTHO05D000368 5.7e-07 58.2 100 31.0
MD02G1120400 Malus domestica HOM05D000576 ORTHO05D000368 5.7e-07 58.2 106 37.7
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 5.7e-07 58.2 113 35.4
AUR62033444 Chenopodium quinoa HOM05D000413 ORTHO05D000292 7.5e-07 57.8 100 37.0
Dinv38540 Davidia involucrata HOM05D000576 ORTHO05D013658 7.5e-07 57.8 104 39.4
FAN28G2519 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.5e-07 57.8 100 39.0
Prupe.7G069300 Prunus persica HOM05D000576 ORTHO05D000368 7.5e-07 57.8 101 37.6
QL10p004694 Quercus lobata HOM05D000576 ORTHO05D000368 7.5e-07 57.8 114 36.8
Actinidia23749 Actinidia chinensis HOM05D000576 ORTHO05D000368 9.7e-07 57.4 107 38.3
Migut.J00211 Erythranthe guttata HOM05D000576 ORTHO05D000368 9.7e-07 57.4 124 31.5
Hma1.2p1_1488F.1_g286620 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 9.7e-07 57.4 113 34.5
Hma1.2p1_1677F.1_g297050 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 9.7e-07 57.4 113 33.6
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 9.7e-07 57.4 103 35.9
Ciclev10008279m.g Citrus clementina HOM05D000576 ORTHO05D000368 1.3e-06 57.0 128 34.4
COL.COLO4_25985 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.3e-06 57.0 111 35.1
DCAR_012385 Daucus carota HOM05D000576 ORTHO05D000368 1.3e-06 57.0 161 28.6
Lj5A99T72 Lonicera japonica HOM05D000576 ORTHO05D000368 1.3e-06 57.0 45 55.6
TWI63G0443 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.3e-06 57.0 123 33.3
Lsat_1_v5_gn_8_12640 Lactuca sativa HOM05D000576 ORTHO05D000368 1.7e-06 56.6 83 41.0
RcHm_v2.0_Chr1g0349301 Rosa chinensis HOM05D000576 ORTHO05D000368 1.7e-06 56.6 102 36.3
Ciclev10008427m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.2e-06 56.2 105 35.2
Ciclev10015410m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.2e-06 56.2 107 36.4
FvH4_1g04271 Fragaria vesca HOM05D000576 ORTHO05D000368 2.2e-06 56.2 100 36.0
FAN15G0784 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.2e-06 56.2 102 36.3
Prupe.7G069200 Prunus persica HOM05D000576 ORTHO05D000368 2.2e-06 56.2 102 33.3
Rhsim01G0067400 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.2e-06 56.2 97 36.1
Migut.D02158 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.8e-06 55.8 106 35.8
Gohir.D02G143600 Gossypium hirsutum HOM05D000576 ORTHO05D000368 2.8e-06 55.8 130 30.0
Gorai.005G161100 Gossypium raimondii HOM05D000576 ORTHO05D000368 2.8e-06 55.8 130 30.0
MD02G1120500 Malus domestica HOM05D000576 ORTHO05D000368 2.8e-06 55.8 106 36.8
HanXRQChr09g0251901 Helianthus annuus HOM05D000576 ORTHO05D000368 3.7e-06 55.5 102 31.4
PGSC0003DMG400010328 Solanum tuberosum HOM05D000576 ORTHO05D000368 3.7e-06 55.5 114 36.0
Duzib248G1067 Durio zibethinus HOM05D000576 ORTHO05D000368 4.8e-06 55.1 130 27.7
Migut.E01276 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.8e-06 55.1 121 31.4
Migut.J00214 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.8e-06 55.1 100 32.0
Migut.J00218 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.8e-06 55.1 109 29.4
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 4.8e-06 55.1 101 34.7
COL.COLO4_13160 Corchorus olitorius HOM05D000576 ORTHO05D000368 8.2e-06 54.3 130 30.0
Gohir.D08G226100 Gossypium hirsutum HOM05D000576 ORTHO05D000368 8.2e-06 54.3 114 29.8
Gorai.004G240100 Gossypium raimondii HOM05D000576 ORTHO05D000368 8.2e-06 54.3 114 29.8
QL10p004673 Quercus lobata HOM05D000576 ORTHO05D000368 8.2e-06 54.3 113 34.5


User provided reference genes

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