Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 4.9e-233 810.8 432 100.0
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 1.2e-157 560.5 310 97.1
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.3e-63 248.1 420 43.6
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 6.1e-58 229.2 430 42.1
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 1.8e-41 174.5 433 37.2
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 6.4e-39 166.0 465 34.6
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 3.2e-38 163.7 433 34.9
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 3.0e-36 157.1 493 33.1
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.5e-35 154.8 491 32.8
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.7e-31 141.4 441 33.3
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.1e-30 138.7 467 32.3
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 5.4e-30 136.3 486 31.1
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 4.6e-29 133.3 352 36.1
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 6.0e-29 132.9 480 31.9
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 3.0e-28 130.6 485 30.9
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.2e-26 125.2 432 31.7
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 1.4e-25 121.7 327 37.3
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 2.3e-25 120.9 350 36.0
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 2.3e-25 120.9 341 34.6
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 3.1e-25 120.6 439 32.6
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 5.2e-25 119.8 380 33.9
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 6.8e-25 119.4 328 36.3
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.2e-24 118.6 407 32.2
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 1.5e-24 118.2 380 33.7
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.5e-24 118.2 380 33.7
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 2.0e-24 117.9 350 35.1
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.0e-24 117.9 491 26.7
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 2.2e-23 114.4 339 35.1
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 3.7e-23 113.6 403 33.7
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 4.9e-23 113.2 345 33.6
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 8.4e-23 112.5 363 35.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.1e-22 112.1 385 33.2
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 2.4e-22 110.9 407 32.4
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 4.1e-22 110.2 340 32.6
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 7.1e-22 109.4 434 31.1
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 1.2e-21 108.6 423 32.2
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.6e-21 108.2 439 31.0
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.6e-21 108.2 431 32.0
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.6e-21 108.2 407 32.2
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 2.7e-21 107.5 428 32.0
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 1.7e-20 104.8 436 30.5
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 2.3e-20 104.4 425 30.1
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 3.0e-20 104.0 416 30.3
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 8.6e-20 102.4 343 33.2
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 8.6e-20 102.4 370 32.4
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 5.6e-19 99.8 414 30.7
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 1.2e-18 98.6 292 34.9
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.6e-18 98.2 435 30.8
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 2.1e-18 97.8 428 28.7
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 2.8e-18 97.4 432 29.9
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 8.1e-18 95.9 428 32.0
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 8.1e-18 95.9 421 31.6
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.4e-17 95.1 464 30.2
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.4e-17 95.1 364 32.7
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 3.1e-17 94.0 439 28.9
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.0e-17 93.6 303 30.7
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 7.6e-16 89.4 317 32.5
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 2.2e-15 87.8 437 30.4
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 6.4e-15 86.3 318 33.3
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 6.4e-15 86.3 423 30.5
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 1.4e-14 85.1 424 28.5
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 1.9e-14 84.7 368 29.1
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.9e-14 84.7 317 31.9
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 1.9e-14 84.7 408 30.4
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 1.3e-12 78.6 417 26.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.3e-12 78.6 397 27.7
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.7e-12 78.2 414 27.3
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 6.6e-12 76.3 339 28.6
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 8.7e-12 75.9 343 28.3
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 1.9e-11 74.7 433 29.8
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 3.3e-11 73.9 406 26.4
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 4.3e-11 73.6 341 29.6
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 7.3e-11 72.8 424 28.1
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 9.6e-11 72.4 378 27.5
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 2.8e-10 70.9 384 27.3
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 4.8e-10 70.1 344 28.2
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 4.8e-10 70.1 344 28.2
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 4.8e-10 70.1 344 28.2
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 6.2e-10 69.7 449 26.7
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 8.1e-10 69.3 337 27.3
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 8.1e-10 69.3 411 26.8
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 6.9e-09 66.2 231 31.2
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.7e-07 61.6 399 28.8
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 4.9e-07 60.1 362 24.9
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 3.2e-06 57.4 439 26.0


User provided reference genes

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