Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.9e-77 292.4 142 100.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.9e-77 292.4 142 100.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 9.1e-51 203.8 141 66.7
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.3e-49 199.9 141 65.2
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.2e-49 199.1 140 67.1
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.7e-47 192.2 141 62.4
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.4e-46 189.9 144 64.6
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 5.1e-46 188.0 135 63.0
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 2.0e-45 186.0 142 59.9
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 3.3e-45 185.3 140 60.7
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 7.4e-45 184.1 140 60.7
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.7e-44 183.0 143 59.4
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.8e-44 182.2 139 59.0
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 3.7e-44 181.8 140 59.3
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 6.3e-44 181.0 140 62.1
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 8.2e-44 180.6 145 57.2
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 1.4e-43 179.9 143 62.2
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.4e-43 179.9 139 56.8
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.4e-43 179.9 139 56.8
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.1e-43 178.7 143 60.1
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.1e-43 178.3 139 58.3
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 6.9e-43 177.6 139 57.6
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.2e-42 176.8 139 57.6
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.5e-42 176.4 146 55.5
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.4e-42 175.3 140 60.0
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.5e-42 174.9 141 56.0
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 5.9e-42 174.5 142 57.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 5.9e-42 174.5 139 56.8
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 5.9e-42 174.5 142 59.2
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.7e-42 174.1 128 61.7
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 7.7e-42 174.1 141 56.7
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 7.7e-42 174.1 143 58.0
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 1.0e-41 173.7 142 57.7
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.2e-41 172.6 140 57.1
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.9e-41 172.2 141 56.7
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 2.9e-41 172.2 146 55.5
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 2.9e-41 172.2 141 57.4
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.9e-41 172.2 140 55.7
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 3.8e-41 171.8 138 56.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 3.8e-41 171.8 142 57.0
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.8e-41 171.8 142 55.6
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 6.5e-41 171.0 140 59.3
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 6.5e-41 171.0 140 59.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 6.5e-41 171.0 118 66.1
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.1e-40 170.2 142 57.0
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.4e-40 169.9 139 57.6
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.9e-40 169.5 138 56.5
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.9e-40 169.5 142 55.6
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.2e-40 168.7 142 54.9
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 5.5e-40 167.9 139 52.5
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.2e-40 167.5 142 54.9
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.6e-39 166.4 137 57.7
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.6e-39 166.4 141 56.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.6e-39 166.4 139 56.8
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 3.6e-39 165.2 141 55.3
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 3.6e-39 165.2 138 53.6
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 3.6e-39 165.2 141 56.0
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.6e-39 165.2 138 51.4
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 4.7e-39 164.9 141 56.0
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 6.1e-39 164.5 141 56.7
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 1.0e-38 163.7 141 56.0
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.0e-38 163.7 141 56.0
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.0e-38 163.7 139 52.5
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.4e-38 163.3 130 57.7
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.4e-38 163.3 139 53.2
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.3e-38 162.5 141 55.3
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.9e-38 161.8 142 54.9
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 3.9e-38 161.8 141 53.2
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 6.7e-38 161.0 139 52.5
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 8.8e-38 160.6 140 55.0
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.1e-37 160.2 142 53.5
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.5e-37 159.8 121 62.8
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 2.6e-37 159.1 139 50.4
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.6e-37 159.1 137 54.7
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.6e-37 159.1 141 55.3
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.3e-37 158.7 140 52.1
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.4e-37 158.3 136 55.1
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 4.4e-37 158.3 129 58.1
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.7e-36 156.4 145 50.3
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 2.2e-36 156.0 143 50.3
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 2.2e-36 156.0 134 53.0
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 4.8e-36 154.8 141 52.5
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 6.3e-36 154.5 141 51.8
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 6.3e-36 154.5 140 49.3
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 4.1e-35 151.8 139 54.0
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.6e-34 149.8 137 50.4
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 2.6e-34 149.1 144 47.9
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.6e-34 149.1 135 46.7
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.5e-34 148.7 142 50.0
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 4.5e-34 148.3 147 47.6
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.0e-33 147.1 147 49.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.7e-33 146.4 135 50.4
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.8e-33 145.2 147 47.6
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 6.5e-33 144.4 143 47.6
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 8.5e-33 144.1 154 44.2
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.1e-32 143.7 139 52.5
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.5e-32 143.3 112 58.9
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.5e-32 143.3 143 46.9
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.5e-32 142.5 119 53.8
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 7.2e-32 141.0 140 46.4
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.2e-31 140.2 138 44.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 2.7e-31 139.0 141 48.2
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 3.6e-31 138.7 138 45.7
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 4.7e-31 138.3 141 51.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 4.7e-31 138.3 141 51.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 8.0e-31 137.5 130 48.5
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.0e-30 137.1 143 48.3
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.2e-30 134.8 138 44.9
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.2e-30 134.8 138 44.9
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 6.7e-30 134.4 101 58.4
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.2e-29 133.7 138 44.2
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.2e-29 133.7 137 44.5
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.7e-28 129.8 137 43.1
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 6.3e-28 127.9 137 42.3
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.4e-27 126.7 137 42.3
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.4e-27 126.7 138 43.5
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 1.4e-27 126.7 143 45.5
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 2.4e-27 125.9 136 41.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 4.1e-27 125.2 140 41.4
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 2.7e-26 122.5 136 40.4
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.5e-26 122.1 93 58.1
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 5.9e-26 121.3 141 44.0
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-25 120.6 135 41.5
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.0e-25 120.6 135 41.5
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.0e-25 120.6 135 41.5
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.5e-24 115.9 110 45.5
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 7.2e-24 114.4 135 40.0
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 9.4e-24 114.0 135 40.0
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 9.4e-24 114.0 135 40.0
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 9.4e-24 114.0 136 39.0
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.6e-23 113.2 138 39.9
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 2.1e-23 112.8 133 41.4
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.4e-22 110.2 118 47.5
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.8e-22 107.5 118 45.8
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 3.4e-21 105.5 136 39.0
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.3e-20 103.6 136 38.2
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 4.8e-20 101.7 136 38.2
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 4.8e-20 101.7 115 42.6
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 4.1e-19 98.6 136 36.8
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 9.1e-19 97.4 139 36.7
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 1.6e-18 96.7 141 36.2
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 2.0e-18 96.3 136 36.8
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.9e-18 94.7 130 37.7
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.1e-16 90.5 119 40.3
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 2.8e-15 85.9 104 41.3
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 6.1e-15 84.7 134 30.6
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.1e-15 84.7 121 36.4
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 8.0e-15 84.3 108 40.7
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-14 83.6 121 34.7
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 2.3e-14 82.8 102 39.2
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.5e-13 80.1 144 38.9
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.0e-13 79.7 142 35.2
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.3e-12 77.0 138 31.9
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.7e-12 76.6 122 34.4
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 2.8e-12 75.9 136 32.4
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.3e-12 74.3 138 29.0
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.0e-10 69.7 126 32.5
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.7e-10 69.3 116 31.0
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.5e-10 68.6 121 30.6
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 5.9e-10 68.2 51 58.8
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 7.8e-10 67.8 93 40.9
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 5.0e-09 65.1 126 31.0
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 6.6e-09 64.7 121 33.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 1.9e-08 63.2 47 59.6
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 9.5e-08 60.8 110 35.5
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 8.0e-07 57.8 134 30.6
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.4e-06 57.0 142 28.9


User provided reference genes

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