Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 4.4e-83 311.2 155 100.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 3.6e-77 291.6 142 100.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 7.3e-54 214.2 154 65.6
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 4.7e-53 211.5 153 65.4
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.9e-50 202.2 154 61.7
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 3.8e-50 201.8 156 64.7
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 4.2e-49 198.4 140 67.1
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 9.2e-49 197.2 155 60.6
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 2.7e-48 195.7 150 60.7
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 3.5e-48 195.3 155 60.0
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 6.0e-48 194.5 152 59.2
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 6.0e-48 194.5 156 62.8
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 6.0e-48 194.5 155 61.9
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 6.0e-48 194.5 151 60.3
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.8e-48 194.1 159 57.2
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.0e-47 193.7 155 59.4
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.0e-47 192.2 155 60.6
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 3.0e-47 192.2 152 57.2
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 3.0e-47 192.2 152 57.2
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 1.9e-46 189.5 153 57.5
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.3e-46 188.3 155 56.1
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.3e-46 188.3 160 55.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 5.6e-46 188.0 153 56.9
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.3e-46 187.6 155 60.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.3e-45 186.8 152 57.2
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.3e-45 186.8 150 57.3
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.6e-45 186.4 155 56.8
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.6e-45 186.4 155 56.8
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.8e-45 185.7 155 57.4
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-45 185.7 153 59.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 3.6e-45 185.3 156 57.1
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 3.6e-45 185.3 154 57.8
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.6e-45 185.3 153 56.9
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 4.8e-45 184.9 152 57.2
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 8.1e-45 184.1 154 57.8
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 8.1e-45 184.1 154 56.5
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 1.1e-44 183.7 155 57.4
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.1e-44 183.7 156 57.1
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.4e-44 183.3 152 57.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.4e-44 183.3 155 59.4
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.4e-44 183.3 155 59.4
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 1.4e-44 183.3 146 57.5
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.8e-44 183.0 160 55.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.0e-44 180.6 142 60.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.0e-44 180.6 155 58.1
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.5e-43 179.9 154 58.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 1.5e-43 179.9 152 53.9
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 2.0e-43 179.5 153 57.5
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.0e-43 179.5 153 55.6
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 2.0e-43 179.5 155 57.4
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.6e-43 179.1 154 57.8
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.4e-43 178.7 153 54.9
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 3.4e-43 178.7 153 55.6
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 5.8e-43 177.9 154 56.5
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 7.6e-43 177.6 155 56.8
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.6e-43 177.6 155 56.8
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.6e-43 177.6 153 54.9
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.7e-42 176.4 155 56.1
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.9e-42 175.6 153 54.9
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.9e-42 175.6 143 59.4
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 3.8e-42 175.3 155 52.9
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.8e-42 175.3 155 56.1
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 3.8e-42 175.3 153 54.2
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 6.4e-42 174.5 155 54.2
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 6.4e-42 174.5 153 53.6
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.1e-41 173.7 154 53.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.4e-41 173.3 155 56.8
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.9e-41 172.9 154 55.2
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.4e-41 172.6 154 55.8
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.4e-41 172.6 150 56.0
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.2e-41 172.2 153 53.6
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.2e-41 172.2 152 50.7
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.4e-41 171.4 150 56.0
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 7.1e-41 171.0 159 52.2
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 9.3e-41 170.6 155 53.5
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 2.1e-40 169.5 156 51.3
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 6.0e-40 167.9 154 53.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 7.8e-40 167.5 155 52.3
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.3e-39 166.8 155 49.7
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 3.9e-39 165.2 148 52.0
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.9e-39 165.2 145 52.4
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.1e-39 164.9 153 54.9
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 6.6e-39 164.5 154 53.9
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.5e-38 163.3 130 57.7
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.5e-38 163.3 155 54.8
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.3e-38 162.2 155 51.0
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 4.3e-38 161.8 157 49.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.3e-37 160.2 147 47.6
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.6e-37 159.8 148 52.0
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.8e-37 159.1 161 47.8
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 3.6e-37 158.7 149 51.0
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 8.1e-37 157.5 157 48.4
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.4e-36 156.8 152 53.3
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.4e-36 156.8 162 50.0
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.8e-36 156.4 157 47.8
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 2.4e-36 156.0 168 44.6
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 4.0e-36 155.2 162 48.1
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.0e-35 152.9 152 46.7
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.6e-35 152.5 155 52.9
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.6e-35 152.5 155 52.9
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 2.6e-35 152.5 156 51.3
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 3.4e-35 152.1 154 50.0
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 4.5e-35 151.8 144 50.7
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 9.9e-35 150.6 153 45.8
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.3e-34 150.2 152 48.0
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.3e-34 150.2 152 48.0
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.3e-34 150.2 153 46.4
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.7e-34 149.8 130 53.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.4e-33 146.7 152 46.1
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.4e-33 146.7 152 46.1
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.9e-33 146.4 125 56.0
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 2.1e-32 142.9 152 44.7
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.6e-32 141.7 152 46.1
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 1.0e-31 140.6 152 43.4
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.8e-31 139.8 152 44.1
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 3.0e-31 139.0 151 43.7
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 6.7e-31 137.9 157 45.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.1e-30 137.1 155 42.6
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 3.3e-30 135.6 151 42.4
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 7.4e-30 134.4 106 58.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 7.4e-30 134.4 101 58.4
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 9.6e-30 134.0 155 45.2
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 3.7e-29 132.1 152 42.8
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.7e-29 132.1 152 42.8
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 3.7e-29 132.1 152 42.8
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.2e-27 127.1 151 41.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 2.0e-27 126.3 153 41.8
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 2.6e-27 125.9 152 42.1
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 3.4e-27 125.6 147 43.5
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 3.4e-27 125.6 152 42.1
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 3.4e-27 125.6 152 42.1
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 9.3e-25 117.5 151 40.4
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.7e-24 115.9 110 45.5
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 3.5e-24 115.5 151 39.7
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.3e-23 113.6 151 39.7
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.0e-23 112.5 157 40.8
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 3.9e-23 112.1 148 41.9
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.1e-22 110.5 151 38.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.9e-22 109.8 151 38.4
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 5.7e-22 108.2 151 38.4
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 9.6e-22 107.5 118 45.8
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 3.1e-20 102.4 155 35.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 3.8e-18 95.5 119 40.3
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 6.5e-18 94.7 146 38.4
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.5e-18 94.7 130 37.7
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.1e-16 89.7 155 36.8
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.7e-16 89.4 141 31.2
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-15 87.4 151 34.4
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.7e-15 84.7 142 35.9
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.7e-15 84.3 157 38.2
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 8.7e-15 84.3 108 40.7
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.9e-14 83.2 143 33.6
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 2.5e-14 82.8 102 39.2
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.6e-13 80.1 150 32.7
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.4e-12 77.0 62 54.8
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.4e-12 77.0 160 32.5
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.8e-12 76.6 150 29.3
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 6.9e-12 74.7 155 35.5
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 9.0e-12 74.3 123 38.2
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.6e-11 72.8 132 33.3
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.9e-10 69.3 147 29.9
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.9e-10 69.3 106 39.6
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.9e-10 69.3 146 30.1
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 8.5e-10 67.8 152 32.2
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 4.2e-09 65.5 139 30.9
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 2.7e-08 62.8 148 32.4
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.5e-06 56.2 142 28.9


User provided reference genes

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