Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P727T12 Lonicera japonica HOM05D001460 ORTHO05D001337 8.1e-11 68.9 33 100.0
Lj3A726T23 Lonicera japonica HOM05D001460 ORTHO05D001337 4.9e-08 59.7 33 87.9
Lj3A726T24 Lonicera japonica HOM05D001460 ORTHO05D001337 4.9e-08 59.7 33 87.9
Lj3C726T0 Lonicera japonica HOM05D001460 ORTHO05D001337 4.9e-08 59.7 33 87.9
Lj3P727T10 Lonicera japonica HOM05D001460 ORTHO05D001337 4.9e-08 59.7 33 87.9
Lj3P727T14 Lonicera japonica HOM05D001460 ORTHO05D001337 4.9e-08 59.7 33 87.9
DCAR_030688 Daucus carota HOM05D001460 ORTHO05D001337 8.4e-08 58.9 33 84.8
Dinv14047 Davidia involucrata HOM05D001460 ORTHO05D001337 1.1e-07 58.5 33 84.8
Dinv14048 Davidia involucrata HOM05D001460 ORTHO05D001337 1.1e-07 58.5 33 84.8
Lj3A726T25 Lonicera japonica HOM05D001460 ORTHO05D001337 1.4e-07 58.2 33 84.8
Lsat_1_v5_gn_6_76441 Lactuca sativa HOM05D001460 ORTHO05D001337 2.4e-07 57.4 33 81.8
DCAR_030687 Daucus carota HOM05D001460 ORTHO05D001337 4.2e-07 56.6 33 81.8
Lj3A726G19 Lonicera japonica HOM05D001460 ORTHO05D001337 4.2e-07 56.6 33 81.8
CDE05G0060 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 5.4e-07 56.2 33 78.8
CDE05G0692 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 5.4e-07 56.2 33 78.8
Cfa008439 Carpinus fangiana HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
Cfa008441 Carpinus fangiana HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
Cfa008443 Carpinus fangiana HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
CDE02G3648 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
Lj6P646T44 Lonicera japonica HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
Manes.15G033100 Manihot esculenta HOM05D001460 ORTHO05D001337 7.1e-07 55.8 33 78.8
Cfa008448 Carpinus fangiana HOM05D001460 ORTHO05D001337 9.3e-07 55.5 33 78.8
Haze_11234 Corylus avellana HOM05D001460 ORTHO05D001337 9.3e-07 55.5 33 78.8
Hma1.2p1_0549F.1_g177010 Hydrangea macrophylla HOM05D001460 ORTHO05D001337 9.3e-07 55.5 33 78.8
GSVIVG01018044001 Vitis vinifera HOM05D001460 ORTHO05D001337 9.3e-07 55.5 29 86.2
Actinidia18529 Actinidia chinensis HOM05D000352 ORTHO05D000260 1.6e-06 54.7 33 78.8
Aa31LG8G9340 Aethionema arabicum HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 75.8
MSTRG.4063 Avicennia marina HOM05D001460 ORTHO05D001337 1.6e-06 54.7 32 75.0
CDE05G2285 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 75.8
Cc03_g04300 Coffea canephora HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 75.8
Lsat_1_v5_gn_6_75760 Lactuca sativa HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
Lsat_1_v5_gn_6_75800 Lactuca sativa HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
Lsat_1_v5_gn_6_76240 Lactuca sativa HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
Lsat_1_v5_gn_6_76700 Lactuca sativa HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
Lsat_1_v5_gn_6_76760 Lactuca sativa HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
Lj3C726T2 Lonicera japonica HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 84.8
MBI11_g30648_MAGBIO Magnolia biondii HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 78.8
QL06p000916 Quercus lobata HOM05D001460 ORTHO05D001337 1.6e-06 54.7 32 75.0
QL06p001407 Quercus lobata HOM05D001460 ORTHO05D001337 1.6e-06 54.7 32 75.0
Sed0003417 Sechium edule HOM05D001460 ORTHO05D001337 1.6e-06 54.7 33 75.8
Atru.chr4.2361 Acer truncatum HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
AT4G14690 Arabidopsis thaliana HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
BcaC09g50140 Brassica carinata HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
BcaNung00346 Brassica carinata HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
A01p22980 Brassica napus HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
C01p28420 Brassica napus HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
BolC1t02785H Brassica oleracea HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
BraA01t02211Z Brassica rapa HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Carub.0007s2749 Capsella rubella HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Carub.0007s2750 Capsella rubella HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Carub.0007s2751 Capsella rubella HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Thhalv10026318m.g Eutrema salsugineum HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Thhalv10026335m.g Eutrema salsugineum HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
HanXRQChr03g0085421 Helianthus annuus HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 78.8
Sabra08G0120500 Salix brachista HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
SGA_v2.0_scaffold353G49717 Striga asiatica HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Thecc.04G238900 Theobroma cacao HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
TWI09G0677 Tripterygium wilfordii HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
TWI73G0287 Tripterygium wilfordii HOM05D001460 ORTHO05D001337 2.1e-06 54.3 33 75.8
Aa31LG8G9320 Aethionema arabicum HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 72.7
Aa31sc221G30 Aethionema arabicum HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 75.8
COL.COLO4_21566 Corchorus olitorius HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 72.7
Eucgr.B01896 Eucalyptus grandis HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 75.8
Glyma.20G150600 Glycine max HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 72.7
HanXRQChr03g0083821 Helianthus annuus HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 75.8
HanXRQChr03g0085361 Helianthus annuus HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 75.8
HanXRQChr08g0221991 Helianthus annuus HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 75.8
Nn005s41408 Nelumbo nucifera HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 72.7
RcHm_v2.0_Chr6g0286531 Rosa chinensis HOM05D001460 ORTHO05D001337 2.7e-06 53.9 32 78.1
Sed0019750 Sechium edule HOM05D001460 ORTHO05D001337 2.7e-06 53.9 33 72.7
vmacro15373 Vaccinium macrocarpon HOM05D001460 ORTHO05D001337 2.7e-06 53.9 32 78.1
AL7G41310 Arabidopsis lyrata HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 72.7
DCAR_002366 Daucus carota HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 75.8
Eucgr.B01008 Eucalyptus grandis HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 72.7
Potri.008G157750 Populus trichocarpa HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 72.7
Potri.008G157900 Populus trichocarpa HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 72.7
RcHm_v2.0_Chr6g0286521 Rosa chinensis HOM05D001460 ORTHO05D001337 3.5e-06 53.5 32 78.1
SGA_v2.0_scaffold191G40426 Striga asiatica HOM05D001460 ORTHO05D001337 3.5e-06 53.5 33 75.8
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.5e-06 53.5 33 75.8
Aa31LG8G9330 Aethionema arabicum HOM05D001460 ORTHO05D001337 4.6e-06 53.1 33 75.8
ECA232G3536 Erigeron canadensis HOM05D001460 ORTHO05D001337 4.6e-06 53.1 33 75.8
Os01g0246400 Oryza sativa ssp. japonica HOM05D001460 ORTHO05D001337 4.6e-06 53.1 32 75.0
Os07g0178700 Oryza sativa ssp. japonica HOM05D001460 ORTHO05D001337 4.6e-06 53.1 32 75.0
Sabra08G0120300 Salix brachista HOM05D001460 ORTHO05D001337 4.6e-06 53.1 33 75.8
AL3G37160 Arabidopsis lyrata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
AT3G22840 Arabidopsis thaliana HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BcaB04g20492 Brassica carinata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BcaC01g03419 Brassica carinata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BcaC01g03424 Brassica carinata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BcaC09g49212 Brassica carinata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
A01p32340 Brassica napus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
A03p42970 Brassica napus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
C01p41350 Brassica napus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
C03p52750 Brassica napus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
C03p52780 Brassica napus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BolC1t04095H Brassica oleracea HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BraA01t03359Z Brassica rapa HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
BraA03t13441Z Brassica rapa HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
CSS0010865 Camellia sinensis var. sinensis HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
CSS0044338 Camellia sinensis var. sinensis HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Carub.0003s2297 Capsella rubella HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
CARHR098700 Cardamine hirsuta HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Ciclev10005974m.g Citrus clementina HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Duzib212G1029 Durio zibethinus HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Glyma.10G243800 Glycine max HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Gohir.A09G219200 Gossypium hirsutum HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Gohir.D09G221400 Gossypium hirsutum HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Gorai.006G242600 Gossypium raimondii HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Potri.008G158200 Populus trichocarpa HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
QL06p001398 Quercus lobata HOM05D001460 ORTHO05D001337 6.0e-06 52.8 32 71.9
Sp3g20540 Schrenkiella parvula HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
Solyc09g082690.3 Solanum lycopersicum HOM05D001460 ORTHO05D001337 6.0e-06 52.8 31 74.2
Sopen09g031550 Solanum pennellii HOM05D001460 ORTHO05D001337 6.0e-06 52.8 31 74.2
TAR365G0892 Trochodendron aralioides HOM05D001460 ORTHO05D001337 6.0e-06 52.8 33 72.7
arahy.Tifrunner.gnm1.ann1.JZ1PRS Arachis hypogaea HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 69.7
BcaC01g03416 Brassica carinata HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 69.7
BcaC01g03421 Brassica carinata HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 69.7
FvH4_2g20400 Fragaria vesca HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
FvH4_2g20420 Fragaria vesca HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
FAN15G2435 Fragaria x ananassa HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
FAN24G0037 Fragaria x ananassa HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
FAN24G0429 Fragaria x ananassa HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
HanXRQChr03g0083841 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
HanXRQChr03g0083881 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
HanXRQChr03g0083901 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
HanXRQChr03g0085431 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
HanXRQChr11g0336061 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
HanXRQChr11g0336411 Helianthus annuus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
Lalb_Chr21g0304781 Lupinus albus HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 72.7
Peaxi162Scf00492g00068 Petunia axillaris HOM05D001460 ORTHO05D001337 7.8e-06 52.4 32 71.9
Phvul.007G062000 Phaseolus vulgaris HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 69.7
QL06p002031 Quercus lobata HOM05D001460 ORTHO05D001337 7.8e-06 52.4 32 71.9
TAR236G0001 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G0166 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G0646 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G0869 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G1317 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G1744 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G3358 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
TAR636G3436 Trochodendron aralioides HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 75.8
VMungo0720G2826 Vigna mungo HOM05D001460 ORTHO05D001337 7.8e-06 52.4 33 69.7


User provided reference genes

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