Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 3.2e-50 201.4 100 100.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 5.8e-28 127.5 106 64.2
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.9e-21 104.0 110 50.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 6.9e-21 104.0 106 51.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.2e-20 103.2 106 50.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.2e-19 99.0 107 49.5
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.9e-19 98.6 105 49.5
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.1e-18 96.7 106 47.2
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.9e-18 95.9 110 46.4
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.6e-17 92.8 106 45.3
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.0e-17 90.9 95 50.5
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.0e-16 90.1 106 43.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.8e-16 89.4 110 44.5
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.3e-16 89.0 106 45.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-16 88.6 98 50.0
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.1e-16 87.8 108 42.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 5.1e-16 87.8 106 44.3
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.5e-15 86.3 106 45.3
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.5e-15 85.5 106 41.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 3.3e-15 85.1 107 46.7
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 5.6e-15 84.3 106 46.2
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.6e-14 82.8 106 43.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.8e-14 82.0 106 42.5
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.7e-14 81.6 106 44.3
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 3.7e-14 81.6 106 44.3
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.7e-14 81.6 106 41.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.7e-14 81.6 106 43.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.2e-14 80.9 108 47.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 8.1e-14 80.5 108 44.4
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.1e-13 80.1 106 42.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.1e-13 80.1 110 42.7
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.4e-13 79.7 108 47.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.8e-13 79.3 112 40.2
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.4e-13 79.0 103 42.7
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.4e-13 79.0 110 40.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 2.4e-13 79.0 103 40.8
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 4.0e-13 78.2 112 42.9
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 4.0e-13 78.2 106 43.4
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.3e-13 77.8 110 40.9
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 6.9e-13 77.4 107 43.9
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.9e-13 77.4 103 41.7
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.0e-13 77.0 108 38.0
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.2e-12 76.6 107 43.0
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.5e-12 76.3 106 39.6
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 2.6e-12 75.5 105 41.9
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 2.6e-12 75.5 109 41.3
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.4e-12 75.1 109 43.1
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 5.8e-12 74.3 109 42.2
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 7.6e-12 73.9 109 42.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.0e-11 73.6 105 41.9
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.3e-11 73.2 106 39.6
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.3e-11 73.2 106 39.6
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-11 73.2 105 41.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.3e-11 73.2 105 41.9
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.3e-11 73.2 108 38.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.2e-11 72.4 106 39.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.2e-11 72.4 106 39.6
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.9e-11 72.0 109 37.6
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.9e-11 72.0 108 37.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.9e-11 72.0 111 38.7
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 3.8e-11 71.6 108 38.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 6.5e-11 70.9 109 37.6
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.1e-10 70.1 110 40.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.1e-10 70.1 107 36.4
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.4e-10 69.7 102 42.2
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.9e-10 69.3 109 37.6
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.9e-10 69.3 107 44.9
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.5e-10 68.9 98 42.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.5e-10 68.9 99 40.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.2e-10 68.6 107 40.2
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-10 68.6 106 38.7
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 4.2e-10 68.2 111 40.5
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 5.5e-10 67.8 111 40.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.5e-10 67.8 106 37.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 5.5e-10 67.8 112 38.4
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 7.1e-10 67.4 110 37.3
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 7.1e-10 67.4 109 37.6
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 7.1e-10 67.4 107 36.4
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.2e-09 66.6 108 34.3
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.6e-09 66.2 104 38.5
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.6e-09 66.2 104 38.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.6e-09 66.2 104 38.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.6e-09 66.2 103 39.8
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.7e-09 65.5 111 38.7
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.5e-09 65.1 108 39.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.0e-09 64.3 110 35.5
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 6.0e-09 64.3 116 36.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 7.9e-09 63.9 111 38.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-08 63.5 108 41.7
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.8e-08 62.8 116 36.2
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.3e-08 62.4 104 37.5
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.3e-08 62.4 111 38.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.0e-08 62.0 108 41.7
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.0e-08 62.0 103 35.9
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 3.9e-08 61.6 108 38.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.1e-08 61.2 104 42.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 5.1e-08 61.2 104 42.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.5e-07 59.7 108 41.7
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.5e-07 59.7 104 37.5
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.9e-07 59.3 106 37.7
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 3.3e-07 58.5 111 36.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 6.2e-06 54.3 66 40.9


User provided reference genes

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