Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 2.8e-29 132.1 117 100.0
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 8.9e-12 73.9 103 40.8
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.7e-10 69.7 103 36.9
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.2e-10 69.3 102 44.1
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 4.9e-10 68.2 103 54.4
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.4e-09 66.6 103 41.7
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.9e-09 66.2 103 41.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 2.4e-09 65.9 100 49.0
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 7.1e-09 64.3 103 50.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 7.1e-09 64.3 103 44.7
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 9.2e-09 63.9 42 66.7
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 9.2e-09 63.9 103 36.9
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.2e-08 63.5 102 52.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.6e-08 63.2 41 65.9
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 2.1e-08 62.8 103 35.9
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.7e-08 62.4 42 59.5
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.7e-08 62.4 103 35.9
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.7e-08 62.4 103 35.0
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 2.7e-08 62.4 103 35.9
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 4.6e-08 61.6 103 45.6
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 6.0e-08 61.2 102 54.9
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 6.0e-08 61.2 102 53.9
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 6.0e-08 61.2 103 35.0
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 6.0e-08 61.2 103 35.0
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 6.0e-08 61.2 101 52.5
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 6.0e-08 61.2 42 61.9
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 6.0e-08 61.2 42 61.9
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 6.0e-08 61.2 42 61.9
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 7.8e-08 60.8 109 34.9
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 7.8e-08 60.8 103 37.9
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 7.8e-08 60.8 103 37.9
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 7.8e-08 60.8 103 33.0
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.8e-08 60.8 42 64.3
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 7.8e-08 60.8 103 51.5
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 7.8e-08 60.8 103 31.1
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.0e-07 60.5 103 33.0
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.0e-07 60.5 102 46.1
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.0e-07 60.5 100 50.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.0e-07 60.5 42 59.5
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.3e-07 60.1 103 34.0
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.3e-07 60.1 38 65.8
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.7e-07 59.7 103 51.5
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.7e-07 59.7 103 51.5
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.7e-07 59.7 101 35.6
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.0e-07 58.9 103 33.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 3.0e-07 58.9 41 61.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 3.0e-07 58.9 41 58.5
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.0e-07 58.9 42 57.1
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 3.0e-07 58.9 42 57.1
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 3.9e-07 58.5 42 59.5
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.9e-07 58.5 42 59.5
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.9e-07 58.5 40 62.5
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.9e-07 58.5 102 54.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 3.9e-07 58.5 103 34.0
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 5.1e-07 58.2 102 41.2
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 6.6e-07 57.8 41 61.0
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 6.6e-07 57.8 103 32.0
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 6.6e-07 57.8 103 32.0
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 8.6e-07 57.4 103 35.9
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 8.6e-07 57.4 41 63.4
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 8.6e-07 57.4 99 47.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.6e-07 57.4 42 57.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-06 57.0 34 67.6
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-06 57.0 34 67.6
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.1e-06 57.0 100 48.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-06 56.6 40 57.5
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.5e-06 56.6 107 39.3
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.5e-06 56.6 103 32.0
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.5e-06 56.6 41 58.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.5e-06 56.6 42 54.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.5e-06 56.6 41 56.1
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.9e-06 56.2 103 31.1
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.9e-06 56.2 103 33.0
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.9e-06 56.2 103 38.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.9e-06 56.2 102 50.0
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.5e-06 55.8 100 62.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.5e-06 55.8 98 48.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 2.5e-06 55.8 41 56.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.5e-06 55.8 42 54.8
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 2.5e-06 55.8 42 54.8
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 3.3e-06 55.5 40 60.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.3e-06 55.5 41 56.1
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.3e-06 55.5 101 46.5
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 4.3e-06 55.1 100 52.0
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 4.3e-06 55.1 103 45.6
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.3e-06 55.1 98 48.0
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 5.6e-06 54.7 40 57.5
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 5.6e-06 54.7 41 56.1
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 5.6e-06 54.7 41 56.1
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 7.3e-06 54.3 41 58.5
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 9.5e-06 53.9 40 57.5
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 9.5e-06 53.9 41 53.7


User provided reference genes

Program Settings