Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P381T2 Lonicera japonica HOM05D010445 ORTHO05D011934 1.0e-75 286.6 139 100.0
Lj3P388T9 Lonicera japonica HOM05D010445 ORTHO05D011934 5.0e-70 267.7 142 93.0
Lj3C388G2 Lonicera japonica HOM05D010445 ORTHO05D011934 1.6e-63 246.1 140 88.6
Lj3A381T7 Lonicera japonica HOM05D010445 ORTHO05D011934 1.3e-62 243.0 138 89.1
Lj3P385T4 Lonicera japonica HOM05D010445 ORTHO05D011934 3.6e-52 208.4 109 91.7
Lj3P389T1 Lonicera japonica HOM05D010445 ORTHO05D011934 4.4e-50 201.4 109 88.1
Lj3A381T8 Lonicera japonica HOM05D010445 ORTHO05D011934 3.3e-37 158.7 109 72.5
Lj3P384T9 Lonicera japonica HOM05D010445 ORTHO05D011934 4.4e-34 148.3 84 81.0
Lj3P390T10 Lonicera japonica HOM05D010445 ORTHO05D011934 9.8e-34 147.1 84 81.0
Lj3P389T0 Lonicera japonica HOM05D010445 ORTHO05D011934 1.9e-32 142.9 92 78.3
Lj3P391T6 Lonicera japonica HOM05D010445 ORTHO05D011934 4.4e-26 121.7 63 88.9
Lj3P388T11 Lonicera japonica HOM05D010445 ORTHO05D011934 4.9e-25 118.2 64 87.5
Lj3P393T4 Lonicera japonica HOM05D010445 ORTHO05D011934 4.9e-25 118.2 63 85.7
Lj3P385T5 Lonicera japonica HOM05D010445 ORTHO05D011934 6.4e-25 117.9 63 84.1
Lj3P390T11 Lonicera japonica HOM05D010445 ORTHO05D011934 4.6e-23 111.7 64 84.4
Lj3P392T5 Lonicera japonica HOM05D010445 ORTHO05D011934 3.0e-22 109.0 63 81.0
Lj3P394T9 Lonicera japonica HOM05D010445 ORTHO05D011934 5.2e-19 98.2 47 91.5
Lj3P396T4 Lonicera japonica HOM05D010445 ORTHO05D011934 2.6e-18 95.9 65 76.9
Dinv27209 Davidia involucrata HOM05D000958 ORTHO05D011934 1.4e-16 90.1 112 44.6
Lj3P386T2 Lonicera japonica HOM05D010445 ORTHO05D011934 1.9e-16 89.7 52 76.9
Lj3P387T13 Lonicera japonica HOM05D010445 ORTHO05D011934 2.4e-16 89.4 60 68.3
Lj3P396T5 Lonicera japonica HOM05D010445 ORTHO05D011934 3.2e-16 89.0 60 68.3
Dinv27211 Davidia involucrata HOM05D000958 ORTHO05D011934 7.3e-13 77.8 131 36.6
Actinidia23415 Actinidia chinensis HOM05D000958 ORTHO05D011934 2.0e-10 69.7 115 38.3
Lj3C811G1 Lonicera japonica HOM05D000958 ORTHO05D000786 4.9e-09 65.1 102 43.1
Actinidia23414 Actinidia chinensis HOM05D000958 ORTHO05D000786 1.1e-08 63.9 108 38.0
BcaB03g14671 Brassica carinata HOM05D000958 ORTHO05D000786 1.1e-08 63.9 133 33.1
C03p42100 Brassica napus HOM05D000958 ORTHO05D000786 1.1e-08 63.9 133 33.1
BolC3t16490H Brassica oleracea HOM05D000958 ORTHO05D000786 1.1e-08 63.9 133 33.1
BcaB04g21328 Brassica carinata HOM05D000958 ORTHO05D000786 1.9e-08 63.2 103 34.0
Duzib052G0059 Durio zibethinus HOM05D000958 ORTHO05D000786 1.9e-08 63.2 83 42.2
AL3G17260 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 2.4e-08 62.8 93 37.6
Lj6g0015579 Lotus japonicus HOM05D000958 ORTHO05D000786 2.4e-08 62.8 154 31.8
Cfa015510 Carpinus fangiana HOM05D000958 ORTHO05D000786 4.2e-08 62.0 114 33.3
Dinv38336 Davidia involucrata HOM05D000958 ORTHO05D000786 4.2e-08 62.0 109 40.4
Gohir.A01G026200 Gossypium hirsutum HOM05D000958 ORTHO05D000786 4.2e-08 62.0 106 36.8
Manes.15G018100 Manihot esculenta HOM05D000958 ORTHO05D000786 5.4e-08 61.6 86 40.7
Actinidia32380 Actinidia chinensis HOM05D000958 ORTHO05D000786 7.1e-08 61.2 85 43.5
Phvul.006G160100 Phaseolus vulgaris HOM05D000958 ORTHO05D000786 7.1e-08 61.2 133 32.3
Ca_13460_v3 Cicer arietinum L. HOM05D000958 ORTHO05D000786 9.3e-08 60.8 118 33.1
Migut.J00554 Erythranthe guttata HOM05D000958 ORTHO05D000786 9.3e-08 60.8 105 36.2
Actinidia00060 Actinidia chinensis HOM05D000958 ORTHO05D000786 1.2e-07 60.5 67 49.3
Aa31LG5G16830 Aethionema arabicum HOM05D000958 ORTHO05D000786 1.2e-07 60.5 96 35.4
Carub.0003s0576 Capsella rubella HOM05D000958 ORTHO05D000786 1.2e-07 60.5 85 37.6
Haze_01040 Corylus avellana HOM05D000958 ORTHO05D000786 1.2e-07 60.5 114 32.5
Dinv44439 Davidia involucrata HOM05D000958 ORTHO05D000786 1.2e-07 60.5 123 35.0
Duzib151G0103 Durio zibethinus HOM05D000958 ORTHO05D000786 1.2e-07 60.5 81 40.7
TWI73G0724 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 1.2e-07 60.5 82 40.2
TAR633G0812 Trochodendron aralioides HOM05D000958 ORTHO05D000786 1.2e-07 60.5 123 37.4
BNapus_Darmor_BZH_scaffold_118p00210 Brassica napus HOM05D000958 ORTHO05D000786 1.6e-07 60.1 103 32.0
Gorai.002G026800 Gossypium raimondii HOM05D000958 ORTHO05D000786 1.6e-07 60.1 84 40.5
TWI53G1847 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 1.6e-07 60.1 86 40.7
A03p34640 Brassica napus HOM05D000958 ORTHO05D000786 2.1e-07 59.7 104 34.6
BraA03t12640Z Brassica rapa HOM05D000958 ORTHO05D000786 2.1e-07 59.7 104 34.6
CiPaw.02G087600 Carya illinoinensis HOM05D000958 ORTHO05D000786 2.1e-07 59.7 117 32.5
Glyma.20G064600 Glycine max HOM05D000958 ORTHO05D000786 2.1e-07 59.7 93 37.6
Gohir.D10G165500 Gossypium hirsutum HOM05D000958 ORTHO05D000786 2.1e-07 59.7 83 41.0
Gorai.011G184700 Gossypium raimondii HOM05D000958 ORTHO05D000786 2.1e-07 59.7 83 41.0
Manes.03G190100 Manihot esculenta HOM05D000958 ORTHO05D000786 2.1e-07 59.7 94 39.4
THA.LOC104827122 Tarenaya hassleriana HOM05D000958 ORTHO05D000786 2.1e-07 59.7 89 33.7
MSTRG.18040 Avicennia marina HOM05D000958 ORTHO05D011934 2.7e-07 59.3 69 40.6
Nitab4.5_0001624g0030 Nicotiana tabacum HOM05D000958 ORTHO05D000786 2.7e-07 59.3 118 34.7
Thecc.04G275400 Theobroma cacao HOM05D000958 ORTHO05D000786 2.7e-07 59.3 88 38.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 3.5e-07 58.9 88 40.9
Potri.010G014800 Populus trichocarpa HOM05D000958 ORTHO05D000786 3.5e-07 58.9 119 37.0
Sp3g05240 Schrenkiella parvula HOM05D000958 ORTHO05D000786 3.5e-07 58.9 101 33.7
BcaC09g47882 Brassica carinata HOM05D000958 ORTHO05D000786 4.6e-07 58.5 106 32.1
BolC1t05630H Brassica oleracea HOM05D000958 ORTHO05D000786 4.6e-07 58.5 106 32.1
COL.COLO4_13951 Corchorus olitorius HOM05D000958 ORTHO05D000786 4.6e-07 58.5 83 38.6
DCAR_030573 Daucus carota HOM05D000958 ORTHO05D000786 4.6e-07 58.5 74 44.6
Potri.010G014950 Populus trichocarpa HOM05D000958 ORTHO05D000786 4.6e-07 58.5 102 36.3
Sabra10G0010000 Salix brachista HOM05D000958 ORTHO05D000786 4.6e-07 58.5 83 41.0
Potri.008G196400 Populus trichocarpa HOM05D000958 ORTHO05D000786 6.0e-07 58.2 92 37.0
Sed0011701 Sechium edule HOM05D000958 ORTHO05D000786 6.0e-07 58.2 67 44.8
ATR0115G007 Amborella trichopoda HOM05D000958 ORTHO05D000786 7.9e-07 57.8 84 41.7
ATR1098G056 Amborella trichopoda HOM05D000958 ORTHO05D000786 7.9e-07 57.8 111 38.7
Eucgr.K01329 Eucalyptus grandis HOM05D000958 ORTHO05D000786 7.9e-07 57.8 80 38.8
Glyma.13G005300 Glycine max HOM05D000958 ORTHO05D000786 7.9e-07 57.8 75 41.3
Ah.13g074410 Amaranthus hybridus HOM05D000958 ORTHO05D000786 1.0e-06 57.4 86 38.4
A05p41710 Brassica napus HOM05D000958 ORTHO05D000786 1.0e-06 57.4 110 32.7
Cc03_g02510 Coffea canephora HOM05D000958 ORTHO05D000786 1.0e-06 57.4 67 46.3
Duzib106G1336 Durio zibethinus HOM05D000958 ORTHO05D000786 1.0e-06 57.4 136 29.4
Nitab4.5_0001149g0060 Nicotiana tabacum HOM05D000958 ORTHO05D000786 1.0e-06 57.4 99 37.4
BraA05t22890Z Brassica rapa HOM05D000958 ORTHO05D000786 1.3e-06 57.0 104 32.7
CANSAT54G2392 Cannabis sativa HOM05D000958 ORTHO05D000786 1.3e-06 57.0 128 35.2
CARHR080850 Cardamine hirsuta HOM05D000958 ORTHO05D000786 1.3e-06 57.0 85 35.3
Eucgr.H03711 Eucalyptus grandis HOM05D000958 ORTHO05D000786 1.3e-06 57.0 67 44.8
Thhalv10020737m.g Eutrema salsugineum HOM05D000958 ORTHO05D000786 1.3e-06 57.0 85 35.3
Gohir.D01G023427 Gossypium hirsutum HOM05D000958 ORTHO05D000786 1.3e-06 57.0 84 39.3
Lj3A1010T58 Lonicera japonica HOM05D000958 ORTHO05D000786 1.3e-06 57.0 82 41.5
Lj5g0023219 Lotus japonicus HOM05D000958 ORTHO05D000786 1.3e-06 57.0 82 39.0
HPP92_002161 Vanilla planifolia HOM05D000958 ORTHO05D000786 1.3e-06 57.0 68 48.5
VMungo0540G1005 Vigna mungo HOM05D000958 ORTHO05D000786 1.3e-06 57.0 67 43.3
arahy.Tifrunner.gnm1.ann1.A59EXP Arachis hypogaea HOM05D000958 ORTHO05D000786 1.7e-06 56.6 102 40.2
arahy.Tifrunner.gnm1.ann1.DIL2CF Arachis hypogaea HOM05D000958 ORTHO05D000786 1.7e-06 56.6 102 40.2
arahy.Tifrunner.gnm1.ann1.HZCM81 Arachis hypogaea HOM05D000958 ORTHO05D000786 1.7e-06 56.6 102 40.2
arahy.Tifrunner.gnm1.ann1.UIUY7Y Arachis hypogaea HOM05D000958 ORTHO05D000786 1.7e-06 56.6 102 40.2
BcaC05g29806 Brassica carinata HOM05D000958 ORTHO05D000786 1.7e-06 56.6 109 33.0
BcaC05g30038 Brassica carinata HOM05D000958 ORTHO05D000786 1.7e-06 56.6 100 31.0
C05p60920 Brassica napus HOM05D000958 ORTHO05D000786 1.7e-06 56.6 109 33.0
Ca_16314_v3 Cicer arietinum L. HOM05D000958 ORTHO05D000786 1.7e-06 56.6 97 36.1
FAN07G2780 Fragaria x ananassa HOM05D000958 ORTHO05D000786 1.7e-06 56.6 67 43.3
Hma1.2p1_0823F.1_g224540 Hydrangea macrophylla HOM05D000958 ORTHO05D000786 1.7e-06 56.6 92 39.1
Medtr3g081490 Medicago truncatula HOM05D000958 ORTHO05D000786 1.7e-06 56.6 85 37.6
Psat5g106760 Pisum sativum HOM05D000958 ORTHO05D000786 1.7e-06 56.6 85 37.6
PGR004G0309 Punica granatum HOM05D000958 ORTHO05D000786 1.7e-06 56.6 75 42.7
CiPaw.13G112400 Carya illinoinensis HOM05D000958 ORTHO05D000786 2.3e-06 56.2 117 35.0
ECA246G3184 Erigeron canadensis HOM05D000351 ORTHO05D000250 2.3e-06 56.2 73 42.5
FAN22G1559 Fragaria x ananassa HOM05D000958 ORTHO05D000786 2.3e-06 56.2 82 37.8
MD16G1176800 Malus domestica HOM05D000958 ORTHO05D000786 2.3e-06 56.2 67 44.8
PSO339G5119 Papaver somniferum HOM05D000958 ORTHO05D000786 2.3e-06 56.2 80 41.2
PGSC0003DMG400022853 Solanum tuberosum HOM05D000958 ORTHO05D000786 2.3e-06 56.2 116 34.5
vmacro15273 Vaccinium macrocarpon HOM05D000958 ORTHO05D000786 2.3e-06 56.2 92 39.1
arahy.Tifrunner.gnm1.ann1.418F0V Arachis hypogaea HOM05D000958 ORTHO05D000786 3.0e-06 55.8 80 38.8
arahy.Tifrunner.gnm1.ann1.AC2PA2 Arachis hypogaea HOM05D000958 ORTHO05D000786 3.0e-06 55.8 132 31.8
arahy.Tifrunner.gnm1.ann1.YDF97G Arachis hypogaea HOM05D000958 ORTHO05D000786 3.0e-06 55.8 132 31.8
EL10Ac3g06573 Beta vulgaris HOM05D000958 ORTHO05D000786 3.0e-06 55.8 77 42.9
BcaC09g47884 Brassica carinata HOM05D000958 ORTHO05D000786 3.0e-06 55.8 106 31.1
CSS0016810 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 3.0e-06 55.8 91 37.4
AUR62039629 Chenopodium quinoa HOM05D000958 ORTHO05D000786 3.0e-06 55.8 105 35.2
MD08G1119900 Malus domestica HOM05D000958 ORTHO05D000786 3.0e-06 55.8 67 44.8
MD13G1175100 Malus domestica HOM05D000958 ORTHO05D000786 3.0e-06 55.8 67 44.8
Rhsim02G0014400 Rhododendron simsii HOM05D000958 ORTHO05D000786 3.0e-06 55.8 73 42.5
SalBow3G2824 Salvia bowleyana HOM05D000958 ORTHO05D000786 3.0e-06 55.8 87 37.9
SEGI_31500 Sequoiadendron giganteum HOM05D000958 ORTHO05D000786 3.0e-06 55.8 99 38.4
TPR.G8258 Trifolium pratense HOM05D000958 ORTHO05D000786 3.0e-06 55.8 81 38.3
Aqoxy1G01624 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 3.9e-06 55.5 96 37.5
Aqoxy5G04135 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 3.9e-06 55.5 96 37.5
CAN.G185.5 Capsicum annuum HOM05D000958 ORTHO05D000786 3.9e-06 55.5 116 34.5
AUR62024991 Chenopodium quinoa HOM05D000958 ORTHO05D000786 3.9e-06 55.5 84 40.5
AUR62029148 Chenopodium quinoa HOM05D000958 ORTHO05D000786 3.9e-06 55.5 82 40.2
Glyma.10G051800 Glycine max HOM05D000958 ORTHO05D000786 3.9e-06 55.5 84 40.5
Glyma.15G099100 Glycine max HOM05D000958 ORTHO05D000786 3.9e-06 55.5 86 37.2
Lj6g0021547 Lotus japonicus HOM05D000958 ORTHO05D000786 3.9e-06 55.5 85 37.6
Lalb_Chr18g0055811 Lupinus albus HOM05D000958 ORTHO05D000786 3.9e-06 55.5 67 43.3
MBI10_g06417_MAGBIO Magnolia biondii HOM05D000958 ORTHO05D000786 3.9e-06 55.5 84 39.3
Peaxi162Scf01067g00023 Petunia axillaris HOM05D000958 ORTHO05D000786 3.9e-06 55.5 118 33.1
Prupe.1G143600 Prunus persica HOM05D000958 ORTHO05D000786 3.9e-06 55.5 67 43.3
TWI31G0053 Tripterygium wilfordii HOM05D000958 ORTHO05D000786 3.9e-06 55.5 85 40.0
Aqoxy5G03049 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 5.1e-06 55.1 81 43.2
BolC5t34748H Brassica oleracea HOM05D000958 ORTHO05D000786 5.1e-06 55.1 93 34.4
CSS0007627 Camellia sinensis var. sinensis HOM05D000958 ORTHO05D000786 5.1e-06 55.1 73 42.5
CiPaw.01G154800 Carya illinoinensis HOM05D000958 ORTHO05D000786 5.1e-06 55.1 92 34.8
COL.COLO4_27039 Corchorus olitorius HOM05D000958 ORTHO05D000786 5.1e-06 55.1 80 38.8
FvH4_4g17000 Fragaria vesca HOM05D000958 ORTHO05D000786 5.1e-06 55.1 67 41.8
FAN12G0623 Fragaria x ananassa HOM05D000958 ORTHO05D000786 5.1e-06 55.1 67 41.8
FAN12G3427 Fragaria x ananassa HOM05D000958 ORTHO05D000786 5.1e-06 55.1 67 41.8
FAN17G0367 Fragaria x ananassa HOM05D000958 ORTHO05D000786 5.1e-06 55.1 67 41.8
PGR004G1512 Punica granatum HOM05D000958 ORTHO05D000786 5.1e-06 55.1 83 37.3
QL06p006964 Quercus lobata HOM05D000958 ORTHO05D000786 5.1e-06 55.1 90 36.7
GSVIVG01017826001 Vitis vinifera HOM05D000958 ORTHO05D000786 5.1e-06 55.1 90 36.7
Aqoxy2G03144 Aquilegia oxysepala HOM05D000958 ORTHO05D000786 6.6e-06 54.7 94 37.2
arahy.Tifrunner.gnm1.ann1.NLJ7EF Arachis hypogaea HOM05D000958 ORTHO05D000786 6.6e-06 54.7 80 37.5
arahy.Tifrunner.gnm1.ann1.SN11VZ Arachis hypogaea HOM05D000958 ORTHO05D000786 6.6e-06 54.7 80 37.5
CAN.G631.21 Capsicum annuum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 73 42.5
Lsat_1_v5_gn_3_23520 Lactuca sativa HOM05D000958 ORTHO05D000786 6.6e-06 54.7 88 38.6
PSO675G5771 Papaver somniferum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 71 43.7
PSO675G5915 Papaver somniferum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 71 43.7
Psat1g186640 Pisum sativum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 67 43.3
PGR119G0979 Punica granatum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 117 35.0
RcHm_v2.0_Chr4g0420671 Rosa chinensis HOM05D000958 ORTHO05D000786 6.6e-06 54.7 82 36.6
Sc19g0004840 Simmondsia chinensis HOM05D000958 ORTHO05D000786 6.6e-06 54.7 76 42.1
Solyc11g069350.2 Solanum lycopersicum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 84 41.7
Sopen11g028070 Solanum pennellii HOM05D000958 ORTHO05D000786 6.6e-06 54.7 84 41.7
PGSC0003DMG400008105 Solanum tuberosum HOM05D000958 ORTHO05D000786 6.6e-06 54.7 73 42.5
SGA_v2.0_scaffold126G33923 Striga asiatica HOM05D000958 ORTHO05D000786 6.6e-06 54.7 68 42.6
THA.LOC104802730 Tarenaya hassleriana HOM05D000958 ORTHO05D000786 6.6e-06 54.7 85 35.3
TAR627G0312 Trochodendron aralioides HOM05D000958 ORTHO05D000786 6.6e-06 54.7 133 30.8
unitig_749.g14270 Utricularia gibba HOM05D000958 ORTHO05D000786 6.6e-06 54.7 68 42.6
vmacro03195 Vaccinium macrocarpon HOM05D000958 ORTHO05D000786 6.6e-06 54.7 85 41.2
arahy.Tifrunner.gnm1.ann1.8GSN0E Arachis hypogaea HOM05D000958 ORTHO05D000786 8.7e-06 54.3 101 36.6
Duzib093G1740 Durio zibethinus HOM05D000958 ORTHO05D000786 8.7e-06 54.3 93 35.5
Manes.04G021800 Manihot esculenta HOM05D000958 ORTHO05D000786 8.7e-06 54.3 117 34.2
PSO063G0287 Papaver somniferum HOM05D000958 ORTHO05D000786 8.7e-06 54.3 68 44.1
Phvul.006G002500 Phaseolus vulgaris HOM05D000958 ORTHO05D000786 8.7e-06 54.3 85 37.6
Sabra06G0017500 Salix brachista HOM05D000958 ORTHO05D000786 8.7e-06 54.3 80 38.8
Thecc.05G057800 Theobroma cacao HOM05D000958 ORTHO05D000786 8.7e-06 54.3 73 41.1
VMungo0540G0404 Vigna mungo HOM05D000958 ORTHO05D000786 8.7e-06 54.3 85 37.6


User provided reference genes

Program Settings