Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 6.6e-85 317.4 167 100.0
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 2.6e-81 305.4 167 95.8
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 4.3e-68 261.5 157 87.3
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.6e-67 259.6 160 84.4
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.8e-67 258.8 165 82.4
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.8e-67 258.1 165 81.8
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 6.2e-67 257.7 165 81.8
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.2e-67 257.7 165 81.8
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 8.1e-67 257.3 165 81.8
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.1e-66 255.4 156 85.3
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 3.1e-66 255.4 153 84.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 5.3e-66 254.6 153 85.6
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 5.3e-66 254.6 151 86.8
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 5.3e-66 254.6 164 82.9
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 5.3e-66 254.6 153 85.6
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 6.9e-66 254.2 153 84.3
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 9.0e-66 253.8 149 85.2
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 9.0e-66 253.8 165 81.8
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.2e-65 253.4 153 83.7
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.2e-65 253.4 153 83.7
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.2e-65 253.4 153 83.7
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.5e-65 253.1 167 79.0
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 3.4e-65 251.9 163 79.1
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 3.4e-65 251.9 153 83.0
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 3.4e-65 251.9 153 83.0
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 4.5e-65 251.5 163 77.9
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 5.8e-65 251.1 158 79.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 5.8e-65 251.1 151 86.1
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 5.8e-65 251.1 163 79.1
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 5.8e-65 251.1 160 82.5
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 7.6e-65 250.8 165 80.0
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 7.6e-65 250.8 151 87.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.3e-64 250.0 149 85.9
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.7e-64 249.6 165 76.4
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.7e-64 249.6 167 77.8
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.7e-64 249.6 167 77.8
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.7e-64 249.6 163 82.8
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.2e-64 249.2 160 79.4
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 2.9e-64 248.8 150 87.3
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.9e-64 248.8 160 81.2
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 8.4e-64 247.3 160 79.4
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.1e-63 246.9 167 77.2
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 1.1e-63 246.9 167 77.2
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.1e-63 246.9 167 77.2
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 3.2e-63 245.4 165 78.8
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 3.2e-63 245.4 160 78.8
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 4.2e-63 245.0 158 81.6
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 7.1e-63 244.2 165 78.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.6e-62 243.0 153 83.7
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 3.5e-62 241.9 164 76.8
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 3.5e-62 241.9 153 81.7
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 4.6e-62 241.5 164 76.2
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 7.9e-62 240.7 166 76.5
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.9e-62 240.7 157 79.0
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 1.0e-61 240.4 157 79.6
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.8e-61 239.6 164 76.2
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 5.1e-61 238.0 164 75.6
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 8.7e-61 237.3 166 76.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.5e-60 236.5 155 78.1
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.9e-60 236.1 160 78.1
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 5.6e-60 234.6 164 75.0
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 7.4e-60 234.2 153 78.4
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 7.4e-60 234.2 153 79.1
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 7.4e-60 234.2 155 81.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.6e-60 233.8 167 76.0
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.6e-60 233.8 167 76.0
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.6e-59 233.0 157 78.3
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 2.8e-59 232.3 153 78.4
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 6.2e-59 231.1 173 71.1
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.8e-58 229.6 157 74.5
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.8e-58 229.6 158 74.1
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 5.3e-58 228.0 159 67.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 6.9e-58 227.6 162 73.5
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 9.0e-58 227.3 163 72.4
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.2e-57 226.9 159 75.5
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.5e-57 226.5 161 67.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 2.6e-57 225.7 151 76.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.4e-57 225.3 166 70.5
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 5.8e-57 224.6 173 70.5
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 5.8e-57 224.6 168 72.0
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 9.9e-57 223.8 149 75.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 9.9e-57 223.8 149 75.8
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.8e-56 221.9 165 72.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 6.4e-56 221.1 166 72.3
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.4e-56 220.7 175 68.0
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.4e-56 220.7 175 68.0
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.4e-56 220.7 166 71.7
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.4e-55 219.9 165 72.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.2e-55 218.4 151 76.8
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 7.1e-55 217.6 166 71.1
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 7.1e-55 217.6 166 70.5
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 7.1e-55 217.6 166 70.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.2e-54 216.9 154 72.1
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.6e-54 216.5 174 67.2
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 1.6e-54 216.5 170 67.6
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 4.6e-54 214.9 155 74.2
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 6.0e-54 214.5 149 71.1
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 3.0e-53 212.2 158 67.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 6.7e-53 211.1 158 66.5
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 3.7e-51 205.3 165 63.0
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 4.8e-51 204.9 160 68.1
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 1.8e-50 203.0 167 67.1
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 5.3e-50 201.4 165 62.4
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 6.9e-50 201.1 165 61.8
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 4.5e-49 198.4 164 65.9
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 2.5e-47 192.6 155 67.1
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 5.7e-44 181.4 152 60.5
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 2.8e-43 179.1 168 59.5
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.1e-42 175.6 152 57.9
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 2.6e-41 172.6 111 76.6
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.2e-30 137.1 84 81.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.1e-30 136.3 96 72.9
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.7e-24 116.7 99 63.6
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 8.2e-19 97.8 71 71.8
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-16 89.7 118 44.1
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.5e-15 87.0 70 60.0
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.6e-09 67.0 37 78.4
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.0e-09 66.6 50 64.0
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 3.5e-09 65.9 50 68.0
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-07 60.8 51 51.0


User provided reference genes

Program Settings