Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P21G6 Lonicera japonica HOM05D019882 ORTHO05D022470 3.0e-44 182.6 119 100.0
Lj3P20T46 Lonicera japonica HOM05D019882 ORTHO05D022470 6.3e-18 95.1 49 95.9
Lj3P166T13 Lonicera japonica HOM05D019882 ORTHO05D022470 1.0e-12 77.8 54 75.9
Haze_01402 Corylus avellana HOM05D019882 ORTHO05D022470 1.4e-09 67.4 74 50.0
Lj3P44T9 Lonicera japonica HOM05D019882 ORTHO05D022470 2.0e-08 63.5 51 64.7
ClCG02G005890 Citrullus lanatus HOM05D000106 ORTHO05D003154 2.7e-08 63.2 71 46.5
COL.COLO4_27016 Corchorus olitorius HOM05D000021 ORTHO05D000010 1.0e-07 61.2 71 42.3
Cc11_g02190 Coffea canephora HOM05D000021 ORTHO05D000010 1.3e-07 60.8 71 46.5
CsaV3_7G008640 Cucumis sativus L. HOM05D000106 ORTHO05D003154 1.7e-07 60.5 71 45.1
GSVIVG01017926001 Vitis vinifera HOM05D000106 ORTHO05D003154 2.9e-07 59.7 69 47.8
arahy.Tifrunner.gnm1.ann1.JNH43Q Arachis hypogaea HOM05D000029 ORTHO05D006401 3.8e-07 59.3 71 46.5
Gohir.D05G296800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.8e-07 59.3 71 45.1
Gorai.009G313800 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.8e-07 59.3 71 45.1
PSO782G4401 Papaver somniferum HOM05D000132 ORTHO05D000058 5.0e-07 58.9 69 46.4
arahy.Tifrunner.gnm1.ann1.I1LE43 Arachis hypogaea HOM05D000029 ORTHO05D006401 6.6e-07 58.5 71 46.5
AL7G24060 Arabidopsis lyrata HOM05D000029 ORTHO05D001395 8.6e-07 58.2 70 42.9
Thecc.01G388800 Theobroma cacao HOM05D000132 ORTHO05D000058 1.1e-06 57.8 112 39.3
Thhalv10027576m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 1.5e-06 57.4 66 50.0
Atru.chr4.2514 Acer truncatum HOM05D000106 ORTHO05D003154 4.3e-06 55.8 69 42.0
ATR0184G035 Amborella trichopoda HOM05D000311 ORTHO05D000183 4.3e-06 55.8 71 43.7
Os12g0498650 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 4.3e-06 55.8 61 50.8
Aqoxy3G02326 Aquilegia oxysepala HOM05D000029 ORTHO05D006810 5.6e-06 55.5 71 43.7
Zm00001eb413670 Zea mays HOM05D000054 ORTHO05D000286 5.6e-06 55.5 69 46.4
AT3G05990 Arabidopsis thaliana HOM05D000106 ORTHO05D003154 7.3e-06 55.1 69 40.6
BcaC03g16847 Brassica carinata HOM05D000021 ORTHO05D000010 7.3e-06 55.1 72 40.3
A01p09450 Brassica napus HOM05D000029 ORTHO05D001395 7.3e-06 55.1 70 42.9
BraA01t00887Z Brassica rapa HOM05D000029 ORTHO05D001395 7.3e-06 55.1 70 42.9
Lsat_1_v5_gn_9_21560 Lactuca sativa HOM05D000106 ORTHO05D002214 7.3e-06 55.1 69 43.5
RcHm_v2.0_Chr2g0114381 Rosa chinensis HOM05D000021 ORTHO05D000010 7.3e-06 55.1 71 38.0
Atru.chr5.2708 Acer truncatum HOM05D000106 ORTHO05D003154 9.5e-06 54.7 71 43.7
Solyc11g020280.2 Solanum lycopersicum HOM05D000029 ORTHO05D006810 9.5e-06 54.7 70 41.4
Sopen11g010570 Solanum pennellii HOM05D000029 ORTHO05D006810 9.5e-06 54.7 70 41.4


User provided reference genes

Program Settings