Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 3.9e-80 301.6 175 100.0
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.7e-33 145.2 143 62.2
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 4.7e-33 145.2 106 72.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.5e-26 120.9 97 62.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.6e-25 120.2 181 53.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-25 119.8 198 42.4
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.6e-25 119.0 178 43.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.7e-25 118.6 181 41.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.1e-25 117.9 181 43.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.1e-24 115.9 170 49.4
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.2e-24 115.2 190 40.0
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.4e-23 112.1 167 50.9
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.8e-23 110.9 145 46.9
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.3e-22 110.5 181 41.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.2e-22 109.8 191 38.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-21 107.5 191 38.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.9e-21 106.7 168 41.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.1e-20 103.2 80 65.0
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.1e-20 103.2 97 58.8
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.0e-19 100.9 179 39.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.7e-19 100.1 176 38.1
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 3.0e-19 99.4 187 36.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 3.9e-19 99.0 99 53.5
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 5.1e-19 98.6 189 42.3
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.6e-19 97.8 179 38.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 8.6e-19 97.8 183 42.1
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.6e-18 95.1 176 37.5
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 7.3e-18 94.7 97 50.5
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.2e-17 94.0 179 36.9
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.2e-17 94.0 179 38.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-17 94.0 97 51.5
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.6e-17 93.6 87 56.3
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.1e-17 93.2 176 36.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 8.1e-17 91.3 150 40.7
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-16 90.9 89 57.3
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.4e-16 90.5 175 36.0
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.8e-16 90.1 182 39.6
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.1e-16 89.4 185 36.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.1e-16 89.4 95 54.7
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 6.8e-16 88.2 110 57.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 8.9e-16 87.8 97 50.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.2e-15 87.4 102 50.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-15 87.4 160 38.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.6e-15 86.3 97 49.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.4e-15 85.9 75 57.3
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 4.4e-15 85.5 82 58.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 9.9e-15 84.3 77 50.6
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.7e-14 83.6 95 50.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.2e-14 83.2 178 35.4
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.9e-14 82.8 178 39.9
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.7e-14 82.4 186 34.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 4.9e-14 82.0 157 35.7
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.9e-14 82.0 189 34.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 8.4e-14 81.3 80 51.2
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 8.4e-14 81.3 98 50.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.9e-13 80.1 87 57.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.9e-13 80.1 98 50.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.4e-13 79.7 74 51.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.4e-13 79.7 80 48.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.4e-13 79.7 74 51.4
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.4e-13 79.7 80 48.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.4e-13 79.7 184 32.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.4e-13 79.7 87 50.6
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.2e-13 79.3 83 53.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.2e-13 79.3 97 49.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 4.1e-13 79.0 77 53.2
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 4.1e-13 79.0 75 50.7
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.4e-13 78.6 79 50.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.4e-13 78.6 77 54.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 9.2e-13 77.8 77 49.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 9.2e-13 77.8 178 33.1
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 9.2e-13 77.8 75 49.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.2e-12 77.4 88 47.7
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-12 77.4 118 42.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.6e-12 77.0 164 35.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.1e-12 76.6 87 47.1
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.7e-12 76.3 77 46.8
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.5e-12 75.9 65 55.4
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 7.8e-12 74.7 74 50.0
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 7.8e-12 74.7 74 50.0
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 7.8e-12 74.7 74 50.0
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 7.8e-12 74.7 74 50.0
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.8e-12 74.7 182 40.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.0e-11 74.3 78 51.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.3e-11 73.9 118 43.2
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.7e-11 73.6 75 46.7
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.7e-11 73.6 165 35.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.9e-11 72.4 190 33.7
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.9e-11 72.4 217 32.3
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 6.6e-11 71.6 81 45.7
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 4.3e-10 68.9 112 42.9
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.3e-10 68.2 181 30.4
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.2e-09 67.4 164 32.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.6e-09 67.0 88 46.6
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.1e-09 66.6 75 49.3
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.8e-09 66.2 87 46.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.8e-09 66.2 97 39.2
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 3.6e-09 65.9 185 31.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.4e-08 63.2 153 33.3
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.1e-08 62.8 99 42.4
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 3.1e-08 62.8 111 45.0
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 8.9e-08 61.2 155 34.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.6e-07 59.7 97 42.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.4e-07 59.3 74 39.2
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 7.6e-07 58.2 99 41.4
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-06 57.4 74 40.5
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.7e-06 57.0 82 48.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 8.4e-06 54.7 98 40.8


User provided reference genes

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