Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 8.7e-279 963.0 482 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 5.0e-226 787.7 479 81.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-225 786.6 478 80.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.8e-223 779.2 478 78.5
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.6e-222 775.4 478 77.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.1e-220 770.0 478 78.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.4e-220 768.8 478 76.6
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.1e-220 768.5 480 77.5
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 4.1e-220 768.1 482 76.6
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 5.3e-220 767.7 478 77.2
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.3e-220 767.7 478 77.4
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 5.9e-219 764.2 478 77.4
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.7e-219 763.8 478 77.2
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.2e-218 762.3 479 76.8
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.9e-218 761.9 478 77.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 5.0e-218 761.1 474 77.8
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.5e-217 759.6 477 76.9
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.9e-217 759.2 478 77.4
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 2.5e-217 758.8 478 76.6
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.2e-217 758.4 482 75.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.0e-216 753.8 473 76.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.8e-215 752.7 478 77.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.0e-214 749.2 475 75.8
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.6e-214 748.8 474 77.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.6e-214 748.8 477 76.1
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.3e-214 748.4 476 75.8
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.3e-213 746.5 471 77.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 3.7e-213 745.0 478 75.1
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 8.2e-213 743.8 477 76.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.4e-212 743.0 479 75.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.4e-212 743.0 474 75.1
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 7.0e-212 740.7 482 73.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 2.7e-211 738.8 478 75.3
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.9e-211 737.6 482 73.7
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 7.7e-211 737.3 477 74.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 7.7e-211 737.3 478 74.7
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-210 736.5 477 74.2
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.2e-210 735.7 479 73.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.8e-210 734.9 477 74.2
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.5e-210 734.2 478 74.3
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.5e-210 733.8 475 74.3
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 8.5e-210 733.8 477 74.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.1e-209 733.4 477 74.8
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.9e-209 732.6 477 75.1
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.6e-208 729.6 472 72.9
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.6e-208 729.6 476 73.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 3.6e-208 728.4 477 74.0
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.0e-207 726.9 476 73.5
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.4e-207 726.5 480 74.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 6.8e-207 724.2 477 74.4
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 8.8e-207 723.8 478 72.0
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 8.8e-207 723.8 477 74.0
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.2e-206 723.4 482 73.4
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.6e-206 722.2 476 73.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.6e-206 722.2 477 73.2
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 3.4e-206 721.8 473 72.9
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 4.4e-206 721.5 473 74.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.3e-205 719.9 478 70.9
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.3e-205 719.9 477 73.6
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.7e-205 718.4 479 72.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.8e-205 718.0 476 71.8
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 4.1e-204 714.9 477 70.4
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.7e-203 712.2 477 73.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.3e-202 709.9 477 71.1
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 6.6e-202 707.6 478 73.0
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-201 706.1 447 76.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.2e-201 704.9 474 71.3
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 5.5e-201 704.5 475 70.9
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.2e-201 704.1 442 76.9
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.8e-200 702.2 480 72.3
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.4e-199 699.9 442 76.2
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.8e-199 699.5 482 72.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 8.9e-199 697.2 441 75.1
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.3e-197 693.3 468 72.0
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 6.3e-197 691.0 441 74.6
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.4e-196 689.9 474 71.7
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 4.1e-196 688.3 454 73.1
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.1e-196 688.3 478 68.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.2e-195 686.8 478 68.2
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.5e-195 685.3 478 68.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.5e-195 684.9 478 68.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 7.8e-195 684.1 478 68.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.0e-194 683.7 478 68.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 3.8e-194 681.8 477 71.1
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.6e-194 680.6 478 66.7
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 8.0e-192 674.1 477 66.7
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 3.1e-191 672.2 477 66.5
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.6e-190 669.1 480 67.7
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 7.5e-190 667.5 466 69.5
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.1e-188 663.7 472 67.8
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.8e-187 657.5 474 69.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.7e-186 656.4 476 65.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.7e-186 656.4 476 65.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.7e-186 656.4 476 65.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 9.5e-185 650.6 479 64.9
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.6e-184 648.7 405 76.8
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.1e-183 647.1 477 69.2
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.4e-183 646.7 476 66.6
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.3e-183 646.0 468 68.2
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.3e-181 640.2 440 71.1
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.7e-181 639.8 472 64.6
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 6.4e-181 637.9 468 65.2
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.0e-178 630.6 473 64.5
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.6e-176 623.2 383 78.6
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 5.2e-175 618.2 388 76.8
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.6e-174 615.9 453 66.2
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 4.9e-173 611.7 468 66.0
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 6.0e-171 604.7 469 65.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 7.8e-171 604.4 468 63.5
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.9e-166 587.4 477 64.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.8e-165 585.5 441 65.5
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.5e-158 563.5 474 58.6
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 7.9e-147 524.6 450 56.4
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.6e-145 517.7 473 55.2
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 4.8e-144 515.4 470 55.5
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 6.7e-138 495.0 317 77.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.3e-137 492.7 327 73.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.6e-136 490.3 345 70.7
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.4e-135 487.3 339 69.6
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.0e-134 483.4 469 52.0
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.5e-118 430.6 466 49.8
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.6e-118 429.9 295 72.2
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 3.8e-117 426.0 295 71.9
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 4.7e-115 419.1 283 70.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.2e-110 404.4 380 56.6
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.3e-105 386.3 250 74.0
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 3.4e-97 359.8 538 41.1
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.7e-97 359.0 605 37.9
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.9e-84 317.4 452 41.4
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.4e-81 306.6 460 41.3
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.5e-68 263.8 155 77.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 9.9e-57 225.3 213 54.5
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 1.2e-49 201.8 249 47.0
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 3.0e-45 187.2 145 66.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.9e-38 162.5 108 76.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.3e-37 161.0 306 35.6
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 6.4e-32 142.9 116 62.1
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.9e-31 141.4 242 40.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.2e-30 138.7 87 75.9
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 3.9e-29 133.7 95 69.5
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 7.4e-20 102.8 68 70.6
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 4.8e-19 100.1 90 56.7
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 4.1e-18 97.1 68 76.5
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.0e-17 94.7 71 64.8


User provided reference genes

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