Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3P1004T60 Lonicera japonica HOM05D000003 ORTHO05D000126 3.2e-55 218.0 98 100.0
Lj8P336T24 Lonicera japonica HOM05D000003 ORTHO05D000126 1.7e-32 142.5 67 91.0
Lj2C538T6 Lonicera japonica HOM05D000003 ORTHO05D000126 1.8e-29 132.5 99 63.6
Lj2C28T8 Lonicera japonica HOM05D000003 ORTHO05D000126 2.4e-26 122.1 93 58.1
Lj4C700T0 Lonicera japonica HOM05D000003 ORTHO05D000126 1.2e-22 109.8 78 55.1
Lj4C411T6 Lonicera japonica HOM05D000003 ORTHO05D000126 8.8e-21 103.6 67 71.6
Lj4C408G4 Lonicera japonica HOM05D000003 ORTHO05D000126 5.7e-20 100.9 66 69.7
Lj9C2T0 Lonicera japonica HOM05D000003 ORTHO05D000126 1.7e-19 99.4 81 51.9
CANSAT21G2347 Cannabis sativa HOM05D000003 ORTHO05D000126 1.8e-18 95.9 98 42.9
CANSAT54G2080 Cannabis sativa HOM05D000003 ORTHO05D000126 4.1e-18 94.7 85 43.5
CANSAT56G1743 Cannabis sativa HOM05D000003 ORTHO05D000126 9.1e-18 93.6 75 49.3
CANSAT80G2777 Cannabis sativa HOM05D000003 ORTHO05D000126 1.6e-17 92.8 65 52.3
CANSAT01G0472 Cannabis sativa HOM05D000003 ORTHO05D000126 7.7e-17 90.5 73 46.6
CANSAT13G0002 Cannabis sativa HOM05D000003 ORTHO05D000126 1.0e-16 90.1 65 50.8
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-16 89.7 96 40.6
CANSAT64G1979 Cannabis sativa HOM05D000003 ORTHO05D000126 1.3e-16 89.7 65 50.8
CANSAT01G1699 Cannabis sativa HOM05D000003 ORTHO05D000126 1.7e-16 89.4 73 45.2
CANSAT56G1051 Cannabis sativa HOM05D000003 ORTHO05D000126 3.8e-16 88.2 84 46.4
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-16 87.8 85 43.5
CANSAT64G1905 Cannabis sativa HOM05D000003 ORTHO05D000126 6.5e-16 87.4 73 46.6
CANSAT25G1151 Cannabis sativa HOM05D000003 ORTHO05D000126 1.9e-15 85.9 63 57.1
CANSAT54G1259 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-15 85.1 98 39.8
CANSAT25G2150 Cannabis sativa HOM05D000003 ORTHO05D000126 4.2e-15 84.7 73 46.6
CANSAT35G1841 Cannabis sativa HOM05D000003 ORTHO05D000126 4.2e-15 84.7 95 42.1
CANSAT56G3060 Cannabis sativa HOM05D000003 ORTHO05D000126 4.2e-15 84.7 85 44.7
CANSAT78G2226 Cannabis sativa HOM05D000003 ORTHO05D000126 4.2e-15 84.7 73 47.9
CANSAT01G2293 Cannabis sativa HOM05D000003 ORTHO05D000126 5.5e-15 84.3 73 41.1
CANSAT64G0727 Cannabis sativa HOM05D000003 ORTHO05D000126 7.2e-15 84.0 73 43.8
CANSAT21G2271 Cannabis sativa HOM05D000003 ORTHO05D000126 1.2e-14 83.2 96 43.8
CANSAT56G1157 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-14 83.2 73 49.3
CANSAT78G1810 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-14 82.8 70 48.6
CANSAT25G1129 Cannabis sativa HOM05D000003 ORTHO05D000126 2.7e-14 82.0 88 45.5
CANSAT25G2776 Cannabis sativa HOM05D000003 ORTHO05D000126 2.7e-14 82.0 94 38.3
Lj8C13T6 Lonicera japonica HOM05D000003 ORTHO05D000126 2.7e-14 82.0 88 40.9
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-14 81.6 73 46.6
CANSAT01G2714 Cannabis sativa HOM05D000003 ORTHO05D000126 4.7e-14 81.3 96 42.7
CANSAT35G1400 Cannabis sativa HOM05D000003 ORTHO05D000126 4.7e-14 81.3 85 48.2
CANSAT80G1454 Cannabis sativa HOM05D000003 ORTHO05D000126 4.7e-14 81.3 72 44.4
CANSAT21G0791 Cannabis sativa HOM05D000003 ORTHO05D000126 6.1e-14 80.9 73 43.8
CANSAT80G0239 Cannabis sativa HOM05D000003 ORTHO05D000126 6.1e-14 80.9 79 43.0
CANSAT21G1230 Cannabis sativa HOM05D000003 ORTHO05D000126 8.0e-14 80.5 70 50.0
CANSAT25G0311 Cannabis sativa HOM05D000003 ORTHO05D000126 1.0e-13 80.1 70 50.0
CANSAT25G1688 Cannabis sativa HOM05D000003 ORTHO05D000126 1.0e-13 80.1 96 41.7
CANSAT80G0077 Cannabis sativa HOM05D000003 ORTHO05D000126 1.4e-13 79.7 69 47.8
CANSAT11G1672 Cannabis sativa HOM05D000003 ORTHO05D000126 1.8e-13 79.3 70 41.4
CANSAT54G0414 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-13 79.0 85 40.0
CANSAT01G0549 Cannabis sativa HOM05D000003 ORTHO05D000126 3.0e-13 78.6 77 42.9
CANSAT25G0749 Cannabis sativa HOM05D000003 ORTHO05D000126 3.0e-13 78.6 96 39.6
CANSAT78G0953 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-13 78.6 85 42.4
CANSAT21G0764 Cannabis sativa HOM05D000003 ORTHO05D000126 4.0e-13 78.2 76 43.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-13 77.8 81 43.2
CANSAT25G0383 Cannabis sativa HOM05D000003 ORTHO05D000126 5.2e-13 77.8 73 39.7
CANSAT25G3681 Cannabis sativa HOM05D000003 ORTHO05D000126 5.2e-13 77.8 79 48.1
CANSAT01G2613 Cannabis sativa HOM05D000003 ORTHO05D000126 8.8e-13 77.0 82 40.2
Lj2P1027T17 Lonicera japonica HOM05D000003 ORTHO05D000126 1.5e-12 76.3 74 39.2
Lj5P270T37 Lonicera japonica HOM05D000003 ORTHO05D000126 2.0e-12 75.9 40 72.5
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-12 75.5 66 48.5
CANSAT80G1589 Cannabis sativa HOM05D000003 ORTHO05D000126 3.4e-12 75.1 55 54.5
Lj4C35T6 Lonicera japonica HOM05D000003 ORTHO05D000126 7.5e-12 73.9 73 39.7
CANSAT21G0980 Cannabis sativa HOM05D000003 ORTHO05D000126 9.8e-12 73.6 73 42.5
CANSAT64G1968 Cannabis sativa HOM05D000003 ORTHO05D000126 1.3e-11 73.2 73 39.7
CANSAT64G0573 Cannabis sativa HOM05D000003 ORTHO05D000126 1.7e-11 72.8 73 39.7
Lj6P424T4 Lonicera japonica HOM05D000003 ORTHO05D000126 2.2e-11 72.4 94 38.3
Lj6P432T2 Lonicera japonica HOM05D000003 ORTHO05D000126 2.2e-11 72.4 71 45.1
CANSAT01G2120 Cannabis sativa HOM05D000003 ORTHO05D000126 3.7e-11 71.6 97 43.3
CANSAT64G2526 Cannabis sativa HOM05D000003 ORTHO05D000126 4.8e-11 71.2 75 41.3
Lj1P554T9 Lonicera japonica HOM05D000003 ORTHO05D000126 4.8e-11 71.2 78 39.7
Lj2C654T5 Lonicera japonica HOM05D000003 ORTHO05D000126 4.8e-11 71.2 103 34.0
CANSAT35G1319 Cannabis sativa HOM05D000003 ORTHO05D000126 6.3e-11 70.9 74 45.9
CANSAT56G1659 Cannabis sativa HOM05D000003 ORTHO05D000126 8.3e-11 70.5 70 41.4
CANSAT01G2163 Cannabis sativa HOM05D000003 ORTHO05D000126 1.4e-10 69.7 84 39.3
CANSAT01G1830 Cannabis sativa HOM05D000003 ORTHO05D000126 2.4e-10 68.9 90 40.0
CANSAT11G0462 Cannabis sativa HOM05D000003 ORTHO05D000126 2.4e-10 68.9 73 39.7
Lj8P674T6 Lonicera japonica HOM05D000003 ORTHO05D000126 2.4e-10 68.9 73 37.0
CANSAT11G2125 Cannabis sativa HOM05D000003 ORTHO05D000126 3.1e-10 68.6 79 41.8
CANSAT35G1211 Cannabis sativa HOM05D000003 ORTHO05D000126 3.1e-10 68.6 79 41.8
CANSAT35G1890 Cannabis sativa HOM05D000003 ORTHO05D000126 3.1e-10 68.6 92 32.6
CANSAT56G2563 Cannabis sativa HOM05D000003 ORTHO05D000126 3.1e-10 68.6 70 42.9
CANSAT11G0452 Cannabis sativa HOM05D000003 ORTHO05D000126 9.1e-10 67.0 63 42.9
CANSAT54G2916 Cannabis sativa HOM05D000003 ORTHO05D000126 1.2e-09 66.6 84 33.3
Lj9C481T2 Lonicera japonica HOM05D000003 ORTHO05D000004 1.2e-09 66.6 97 38.1
Nn5g27256 Nelumbo nucifera HOM05D000003 ORTHO05D000126 1.2e-09 66.6 59 44.1
CANSAT56G2562 Cannabis sativa HOM05D000003 ORTHO05D000126 1.6e-09 66.2 62 43.5
CANSAT64G1035 Cannabis sativa HOM05D000003 ORTHO05D000126 2.0e-09 65.9 87 36.8
CANSAT78G0969 Cannabis sativa HOM05D000003 ORTHO05D000126 2.0e-09 65.9 61 45.9
CANSAT80G1020 Cannabis sativa HOM05D000003 ORTHO05D000126 2.0e-09 65.9 84 36.9
Dinv24168 Davidia involucrata HOM05D000723 ORTHO05D001760 2.0e-09 65.9 86 39.5
Lj7P127T7 Lonicera japonica HOM05D000003 ORTHO05D000126 2.0e-09 65.9 85 35.3
Manes.06G103266 Manihot esculenta HOM05D000003 ORTHO05D000004 2.0e-09 65.9 93 35.5
CANSAT25G2375 Cannabis sativa HOM05D000003 ORTHO05D000126 2.7e-09 65.5 61 44.3
CANSAT56G0696 Cannabis sativa HOM05D000003 ORTHO05D000126 2.7e-09 65.5 61 44.3
CANSAT64G0848 Cannabis sativa HOM05D000003 ORTHO05D000126 3.5e-09 65.1 62 43.5
CANSAT11G0233 Cannabis sativa HOM05D000003 ORTHO05D000126 4.5e-09 64.7 53 43.4
CANSAT01G0704 Cannabis sativa HOM05D000003 ORTHO05D000126 5.9e-09 64.3 79 41.8
CANSAT56G1129 Cannabis sativa HOM05D000003 ORTHO05D000126 5.9e-09 64.3 77 40.3
Lj5P129T22 Lonicera japonica HOM05D000003 ORTHO05D000126 5.9e-09 64.3 71 36.6
Manes.04G087125 Manihot esculenta HOM05D000003 ORTHO05D000006 5.9e-09 64.3 92 33.7
CANSAT80G2209 Cannabis sativa HOM05D000003 ORTHO05D000126 1.0e-08 63.5 71 38.0
Dinv44808 Davidia involucrata HOM05D000003 ORTHO05D000126 1.0e-08 63.5 86 38.4
Lj4C754G7 Lonicera japonica HOM05D000003 ORTHO05D000167 1.0e-08 63.5 34 76.5
CANSAT54G2829 Cannabis sativa HOM05D000003 ORTHO05D000126 1.3e-08 63.2 59 52.5
CSS0044481 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 1.7e-08 62.8 67 43.3
CANSAT56G2987 Cannabis sativa HOM05D000003 ORTHO05D000126 1.7e-08 62.8 60 43.3
Lj7P457T16 Lonicera japonica HOM05D000003 ORTHO05D000126 1.7e-08 62.8 62 40.3
QL08p015746 Quercus lobata HOM05D000003 ORTHO05D000126 1.7e-08 62.8 86 37.2
CANSAT25G0594 Cannabis sativa HOM05D000003 ORTHO05D000126 2.2e-08 62.4 109 34.9
Lj3P316T7 Lonicera japonica HOM05D000003 ORTHO05D000126 2.9e-08 62.0 59 44.1
Dinv19695 Davidia involucrata HOM05D000003 ORTHO05D000126 3.8e-08 61.6 86 37.2
SGA_v2.0_scaffold15G07343 Striga asiatica HOM05D000003 ORTHO05D000126 3.8e-08 61.6 61 50.8
CANSAT01G2193 Cannabis sativa HOM05D000003 ORTHO05D000126 5.0e-08 61.2 77 41.6
CANSAT11G0488 Cannabis sativa HOM05D000003 ORTHO05D000126 5.0e-08 61.2 39 56.4
Dinv17959 Davidia involucrata HOM05D000003 ORTHO05D000126 5.0e-08 61.2 50 52.0
QL07p048591 Quercus lobata HOM05D000003 ORTHO05D000126 5.0e-08 61.2 48 52.1
QL11p047246 Quercus lobata HOM05D000003 ORTHO05D000126 5.0e-08 61.2 48 54.2
SHI08642 Sapria himalayana HOM05D000003 ORTHO05D000006 5.0e-08 61.2 69 34.8
Lj3P993T31 Lonicera japonica HOM05D000003 ORTHO05D000126 6.5e-08 60.8 71 35.2
Manes.12G065651 Manihot esculenta HOM05D000003 ORTHO05D000126 6.5e-08 60.8 67 37.3
QL11p053357 Quercus lobata HOM05D000005 ORTHO05D000012 6.5e-08 60.8 92 35.9
SHI02061 Sapria himalayana HOM05D000003 ORTHO05D000126 6.5e-08 60.8 78 34.6
SHI30881 Sapria himalayana HOM05D000003 ORTHO05D000006 6.5e-08 60.8 69 34.8
QL05p054887 Quercus lobata HOM05D000003 ORTHO05D000126 1.1e-07 60.1 93 37.6
SHI31066 Sapria himalayana HOM05D000003 ORTHO05D000126 1.1e-07 60.1 97 33.0
CANSAT01G2836 Cannabis sativa HOM05D000003 ORTHO05D000126 1.5e-07 59.7 59 42.4
Dinv38130 Davidia involucrata HOM05D000003 ORTHO05D000126 1.9e-07 59.3 56 46.4
Dinv43698 Davidia involucrata HOM05D000003 ORTHO05D000006 1.9e-07 59.3 84 38.1
Psat1g179720 Pisum sativum HOM05D000003 ORTHO05D000126 1.9e-07 59.3 74 39.2
CANSAT11G0372 Cannabis sativa HOM05D000003 ORTHO05D000126 2.5e-07 58.9 49 51.0
CSS0020689 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 3.2e-07 58.5 62 38.7
Lj2g0016312 Lotus japonicus HOM05D000003 ORTHO05D000126 3.2e-07 58.5 34 58.8
CANSAT01G1600 Cannabis sativa HOM05D000003 ORTHO05D000126 4.2e-07 58.2 39 48.7
QL04p053003 Quercus lobata HOM05D000003 ORTHO05D000126 4.2e-07 58.2 54 46.3
CSS0003648 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 5.5e-07 57.8 93 33.3
QL08p063412 Quercus lobata HOM05D000003 ORTHO05D000126 5.5e-07 57.8 54 44.4
QL10p014656 Quercus lobata HOM05D000003 ORTHO05D000126 7.2e-07 57.4 87 34.5
RhsimUnG0010100 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.2e-07 57.4 61 39.3
SHI39369 Sapria himalayana HOM05D000003 ORTHO05D000006 7.2e-07 57.4 69 33.3
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-07 57.0 53 47.2
CANSAT80G0750 Cannabis sativa HOM05D000003 ORTHO05D000126 9.4e-07 57.0 45 51.1
Dinv32998 Davidia involucrata HOM05D000003 ORTHO05D000126 9.4e-07 57.0 83 36.1
QL06p038048 Quercus lobata HOM05D000029 ORTHO05D001395 9.4e-07 57.0 54 42.6
CANSAT56G0389 Cannabis sativa HOM05D000003 ORTHO05D000126 1.2e-06 56.6 35 57.1
AUR62027488 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.2e-06 56.6 71 42.3
QL05p062331 Quercus lobata HOM05D000003 ORTHO05D000126 1.2e-06 56.6 54 48.1
Lj3g0026885 Lotus japonicus HOM05D000003 ORTHO05D000126 1.6e-06 56.2 53 45.3
QL93p1863_0020 Quercus lobata HOM05D000003 ORTHO05D000126 1.6e-06 56.2 65 35.4
AUR62013151 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.1e-06 55.8 64 40.6
COL.COLO4_29560 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.1e-06 55.8 64 43.8
CSS0013263 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 2.7e-06 55.5 100 34.0
CANSAT01G3270 Cannabis sativa HOM05D000003 ORTHO05D000126 2.7e-06 55.5 51 45.1
SHI27202 Sapria himalayana HOM05D000003 ORTHO05D000126 2.7e-06 55.5 60 33.3
SGA_v2.0_scaffold19G08685 Striga asiatica HOM05D017992 ORTHO05D000126 2.7e-06 55.5 53 41.5
Dinv03658 Davidia involucrata HOM05D000003 ORTHO05D000126 3.6e-06 55.1 77 37.7
Lj5g0011860 Lotus japonicus HOM05D000003 ORTHO05D000126 3.6e-06 55.1 53 45.3
CANSAT25G1596 Cannabis sativa HOM05D000003 ORTHO05D000126 4.7e-06 54.7 50 40.0
Manes.03G022751 Manihot esculenta HOM05D000003 ORTHO05D000004 4.7e-06 54.7 84 35.7
QL03p039895 Quercus lobata HOM05D000003 ORTHO05D000126 4.7e-06 54.7 67 41.8
QL07p017015 Quercus lobata HOM05D000003 ORTHO05D000126 4.7e-06 54.7 54 44.4
LjContig00408g0002404 Lotus japonicus HOM05D000003 ORTHO05D000126 6.1e-06 54.3 32 59.4
QL05p063585 Quercus lobata HOM05D000003 ORTHO05D000126 6.1e-06 54.3 99 35.4
QL05p084194 Quercus lobata HOM05D000309 ORTHO05D000271 6.1e-06 54.3 53 43.4
QL08p022458 Quercus lobata HOM05D000003 ORTHO05D000126 6.1e-06 54.3 48 43.8
QL11p008960 Quercus lobata HOM05D000003 ORTHO05D000126 6.1e-06 54.3 47 48.9
QL11p008986 Quercus lobata HOM05D000003 ORTHO05D000126 6.1e-06 54.3 47 48.9
AUR62022274 Chenopodium quinoa HOM05D000003 ORTHO05D000126 8.0e-06 53.9 89 32.6
AUR62036218 Chenopodium quinoa HOM05D000003 ORTHO05D000126 8.0e-06 53.9 67 40.3
AUR62044363 Chenopodium quinoa HOM05D000003 ORTHO05D000126 8.0e-06 53.9 67 40.3
Dinv00188 Davidia involucrata HOM05D000003 ORTHO05D000126 8.0e-06 53.9 79 41.8
Dinv10075 Davidia involucrata HOM05D000003 ORTHO05D000126 8.0e-06 53.9 49 46.9
QL10p065510 Quercus lobata HOM05D000003 ORTHO05D000126 8.0e-06 53.9 57 40.4
QL12p015288 Quercus lobata HOM05D000003 ORTHO05D000126 8.0e-06 53.9 91 34.1
QL93p2011_0013 Quercus lobata HOM05D000003 ORTHO05D000126 8.0e-06 53.9 91 34.1


User provided reference genes

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