Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3E903T3 Lonicera japonica HOM05D002242 ORTHO05D002275 3.3e-62 241.5 119 100.0
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 2.0e-19 99.4 137 48.9
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 2.9e-18 95.5 123 50.4
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 2.5e-17 92.4 126 50.0
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.2e-17 92.0 121 46.3
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 3.2e-17 92.0 126 51.6
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 5.5e-17 91.3 130 47.7
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.5e-17 91.3 132 49.2
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 5.5e-17 91.3 132 48.5
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 1.6e-16 89.7 132 47.7
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.1e-16 89.4 132 47.7
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 3.6e-16 88.6 121 47.1
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.6e-16 88.6 121 47.1
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.1e-16 87.8 122 47.5
Psat6g034840 Pisum sativum HOM05D002242 ORTHO05D002275 1.4e-15 86.7 120 46.7
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 2.3e-15 85.9 129 44.2
TPR.G12108 Trifolium pratense HOM05D002242 ORTHO05D002275 3.0e-15 85.5 122 47.5
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 3.9e-15 85.1 120 47.5
CSS0025234 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 5.1e-15 84.7 136 42.6
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.7e-15 84.3 122 46.7
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 6.7e-15 84.3 140 45.7
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.1e-14 83.6 122 42.6
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 3.3e-14 82.0 135 45.9
PGSC0003DMG400018549 Solanum tuberosum HOM05D002242 ORTHO05D002275 4.3e-14 81.6 136 44.1
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 7.4e-14 80.9 116 44.0
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 7.4e-14 80.9 139 44.6
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 9.7e-14 80.5 115 44.3
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 9.7e-14 80.5 121 44.6
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 1.3e-13 80.1 121 43.0
Peaxi162Scf00740g00136 Petunia axillaris HOM05D002242 ORTHO05D002275 1.3e-13 80.1 132 43.2
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 1.3e-13 80.1 133 45.1
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 2.2e-13 79.3 138 42.8
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 1.4e-12 76.6 116 44.8
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 1.4e-12 76.6 133 42.9
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 2.4e-12 75.9 115 50.4
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 3.1e-12 75.5 137 41.6
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 4.1e-12 75.1 116 44.0
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 5.3e-12 74.7 131 40.5
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 5.3e-12 74.7 128 46.1
VMungo0647G2336 Vigna mungo HOM05D002242 ORTHO05D002275 5.3e-12 74.7 115 45.2
TWI39G0876 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.2e-11 73.6 132 42.4
CAN.G481.20 Capsicum annuum HOM05D002242 ORTHO05D002275 2.0e-11 72.8 136 41.2
MD07G1286900 Malus domestica HOM05D002242 ORTHO05D002275 2.6e-11 72.4 131 43.5
CANSAT21G1534 Cannabis sativa HOM05D002242 ORTHO05D002275 7.7e-11 70.9 151 37.7
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.7e-11 70.9 118 42.4
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 7.7e-11 70.9 139 39.6
MD01G1217700 Malus domestica HOM05D002242 ORTHO05D002275 2.2e-10 69.3 132 41.7
TPR.G18779 Trifolium pratense HOM05D002242 ORTHO05D002275 2.9e-10 68.9 117 40.2
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 8.5e-10 67.4 116 42.2
SalBow2G3365 Salvia bowleyana HOM05D002242 ORTHO05D002275 8.5e-10 67.4 110 42.7
arahy.Tifrunner.gnm1.ann1.N8QUMN Arachis hypogaea HOM05D002242 ORTHO05D002275 1.1e-09 67.0 121 40.5
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.4e-09 66.6 116 41.4
Medtr3g091680 Medicago truncatula HOM05D002242 ORTHO05D002275 1.4e-09 66.6 117 39.3
Ca_16716_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 1.9e-09 66.2 121 36.4
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.9e-09 66.2 136 39.0
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.9e-09 66.2 136 39.0
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.9e-09 66.2 133 39.8
Phvul.001G075100 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 2.5e-09 65.9 115 41.7
Lalb_Chr08g0240171 Lupinus albus HOM05D002242 ORTHO05D002275 4.2e-09 65.1 114 38.6
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.2e-08 63.5 156 31.4
VMungo1309G2827 Vigna mungo HOM05D002242 ORTHO05D002275 1.2e-08 63.5 106 44.3
Gohir.A03G051900 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.6e-08 63.2 116 44.8
Ca_12789_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 2.7e-08 62.4 95 46.3
Gohir.D03G115200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.7e-08 62.4 125 41.6
Psat5g078440 Pisum sativum HOM05D002242 ORTHO05D002275 2.7e-08 62.4 120 39.2
AT4G27810 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 4.7e-08 61.6 116 38.8
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 4.7e-08 61.6 138 36.2
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 4.7e-08 61.6 138 36.2
BcaC03g14465 Brassica carinata HOM05D002242 ORTHO05D002275 1.0e-07 60.5 139 34.5
Gorai.003G121500 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.0e-07 60.5 123 43.1
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.0e-07 60.5 140 36.4
BcaB08g35662 Brassica carinata HOM05D002242 ORTHO05D002275 1.4e-07 60.1 138 35.5
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 2.3e-07 59.3 134 35.1
A02p11370 Brassica napus HOM05D002242 ORTHO05D002275 2.3e-07 59.3 131 36.6
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 2.3e-07 59.3 138 35.5
C07p55720 Brassica napus HOM05D002242 ORTHO05D002275 3.0e-07 58.9 116 37.9
BolC7t46052H Brassica oleracea HOM05D002242 ORTHO05D002275 3.0e-07 58.9 116 37.9
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 6.7e-07 57.8 109 46.8
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 6.7e-07 57.8 132 38.6
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 6.7e-07 57.8 155 30.3
A03p57530 Brassica napus HOM05D002242 ORTHO05D002275 8.8e-07 57.4 118 41.5
BraA03t14821Z Brassica rapa HOM05D002242 ORTHO05D002275 8.8e-07 57.4 118 41.5
Cpa.g.sc3.97 Carica papaya HOM05D002242 ORTHO05D002275 8.8e-07 57.4 134 37.3
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 8.8e-07 57.4 136 37.5
C01p24200 Brassica napus HOM05D002242 ORTHO05D002275 1.1e-06 57.0 118 39.0
ClCG05G008990 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.1e-06 57.0 131 33.6
Thhalv10027290m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 1.1e-06 57.0 116 38.8
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 1.5e-06 56.6 141 36.2
BcaC09g50536 Brassica carinata HOM05D002242 ORTHO05D002275 1.5e-06 56.6 118 39.0
BolC1t02376H Brassica oleracea HOM05D002242 ORTHO05D002275 1.5e-06 56.6 118 39.0
Cc02_g01420 Coffea canephora HOM05D002242 ORTHO05D002275 1.5e-06 56.6 152 32.9
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.0e-06 56.2 149 36.2
AL7G24830 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 2.6e-06 55.8 116 37.9
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 2.6e-06 55.8 146 34.9
BcaNung01619 Brassica carinata HOM05D002242 ORTHO05D002275 3.3e-06 55.5 118 39.0
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 3.3e-06 55.5 142 34.5
Lj1g0024457 Lotus japonicus HOM05D002242 ORTHO05D002275 3.3e-06 55.5 122 34.4
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 4.4e-06 55.1 143 33.6
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 4.4e-06 55.1 112 40.2
Sp7g25790 Schrenkiella parvula HOM05D002242 ORTHO05D002275 4.4e-06 55.1 111 42.3
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 7.4e-06 54.3 140 34.3
A01p19250 Brassica napus HOM05D002242 ORTHO05D002275 9.7e-06 53.9 118 37.3
BraA01t01867Z Brassica rapa HOM05D002242 ORTHO05D002275 9.7e-06 53.9 118 37.3
CARHR235540 Cardamine hirsuta HOM05D002242 ORTHO05D002275 9.7e-06 53.9 108 37.0
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 9.7e-06 53.9 128 35.2
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 9.7e-06 53.9 125 33.6


User provided reference genes

Program Settings