Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.1e-108 396.7 219 100.0
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.6e-41 172.9 232 44.4
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 5.9e-41 171.8 256 43.0
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.8e-40 169.1 252 40.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 2.1e-38 163.3 256 41.0
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.6e-38 162.5 253 42.7
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 6.7e-37 158.3 116 66.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.3e-36 156.0 253 39.5
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 3.3e-36 156.0 116 66.4
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.7e-36 155.2 257 40.1
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.2e-35 153.3 115 65.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.2e-35 153.3 268 37.7
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 2.8e-35 152.9 214 43.9
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.8e-35 152.9 115 66.1
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 8.2e-35 151.4 252 42.9
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.1e-34 151.0 255 37.6
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.8e-34 150.2 115 63.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.4e-34 149.8 116 62.1
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.4e-34 149.8 112 64.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.1e-34 149.4 114 63.2
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 4.1e-34 149.1 134 55.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 5.3e-34 148.7 247 41.7
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.0e-34 148.3 115 66.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 7.0e-34 148.3 115 64.3
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.1e-34 147.9 254 37.8
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 9.1e-34 147.9 254 37.8
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 9.1e-34 147.9 115 60.9
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 9.1e-34 147.9 256 36.7
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 9.1e-34 147.9 256 36.7
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 9.1e-34 147.9 116 61.2
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.6e-33 147.1 116 59.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.6e-33 147.1 116 62.9
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.0e-33 146.7 115 65.2
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.0e-33 146.7 256 38.3
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.6e-33 146.4 116 62.1
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.5e-33 146.0 116 57.8
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.5e-33 146.0 254 37.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 4.5e-33 145.6 116 64.7
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 4.5e-33 145.6 229 42.8
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.9e-33 145.2 116 62.9
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.9e-33 145.2 251 43.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.0e-32 144.4 116 56.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.0e-32 144.4 116 64.7
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.0e-32 144.4 118 58.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.7e-32 143.7 138 52.2
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.7e-32 143.7 116 63.8
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-32 143.3 251 42.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-32 143.3 251 42.6
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.2e-32 143.3 257 38.1
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.9e-32 142.9 130 56.9
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.9e-32 142.9 115 62.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 6.5e-32 141.7 240 38.8
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 6.5e-32 141.7 273 34.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.1e-31 141.0 112 60.7
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.9e-31 140.2 116 60.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 3.2e-31 139.4 259 39.8
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 7.2e-31 138.3 115 60.0
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 7.2e-31 138.3 252 34.9
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 9.4e-31 137.9 116 58.6
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 9.4e-31 137.9 113 63.7
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-30 137.5 114 60.5
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.2e-30 137.5 252 35.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.6e-30 137.1 116 57.8
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.6e-30 137.1 114 60.5
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.6e-30 137.1 116 56.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.1e-30 136.7 115 58.3
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 3.6e-30 136.0 115 57.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.6e-30 136.0 114 59.6
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 3.6e-30 136.0 257 38.1
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 4.7e-30 135.6 130 58.5
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.7e-30 135.6 114 59.6
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 6.1e-30 135.2 245 36.7
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 8.0e-30 134.8 251 37.5
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 8.0e-30 134.8 117 59.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.0e-29 134.4 120 58.3
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.0e-29 134.4 115 59.1
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.4e-29 134.0 115 54.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.8e-29 133.7 115 59.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 3.0e-29 132.9 259 35.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 4.0e-29 132.5 117 59.0
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 6.7e-29 131.7 112 58.9
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 8.8e-29 131.3 115 56.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 8.8e-29 131.3 255 34.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 8.8e-29 131.3 117 57.3
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 8.8e-29 131.3 117 58.1
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.2e-28 131.0 124 53.2
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-28 131.0 249 38.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-28 130.6 250 39.6
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.0e-28 130.2 283 33.2
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 2.6e-28 129.8 118 55.1
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 4.4e-28 129.0 118 54.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.4e-28 129.0 116 56.9
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 5.7e-28 128.6 116 53.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 9.7e-28 127.9 254 33.9
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 9.7e-28 127.9 266 36.5
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.3e-27 127.5 253 34.0
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 6.3e-27 125.2 117 59.0
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.8e-26 123.6 121 53.7
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.1e-26 122.9 141 53.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 4.1e-26 122.5 141 52.5
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 4.1e-26 122.5 141 49.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.1e-26 121.3 262 34.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 9.1e-26 121.3 119 58.8
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-25 120.9 141 52.5
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-25 120.9 141 51.8
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-25 120.9 141 52.5
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 2.7e-25 119.8 102 57.8
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 3.5e-25 119.4 115 50.4
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.3e-24 117.5 141 51.8
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 2.2e-24 116.7 119 56.3
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.5e-24 115.2 122 50.8
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 8.5e-24 114.8 105 54.3
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-23 114.0 105 54.3
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.2e-23 112.8 126 49.2
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.2e-23 112.5 105 53.3
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.2e-23 112.5 131 46.6
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.5e-23 112.1 105 53.3
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.0e-21 107.8 118 49.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-21 107.8 229 41.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-21 107.1 103 52.4
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 4.0e-21 105.9 98 58.2
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 4.4e-20 102.4 129 48.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.4e-20 102.4 103 53.4
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.4e-20 102.4 112 52.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 4.4e-20 102.4 118 50.8
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 9.8e-20 101.3 284 30.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 9.8e-20 101.3 141 45.4
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 7.0e-18 95.1 119 47.9
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 7.0e-18 95.1 119 47.9
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-17 93.2 116 45.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-16 90.9 100 55.0
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-16 90.5 100 55.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.2e-16 90.1 130 40.8
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.9e-16 89.7 118 43.2
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 5.0e-16 89.0 100 54.0
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 7.2e-15 85.1 118 41.5
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-14 84.3 95 50.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.0e-13 79.7 118 42.4
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 5.2e-13 79.0 200 35.5
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 8.8e-13 78.2 52 73.1
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 2.0e-12 77.0 115 39.1
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 9.8e-12 74.7 76 52.6
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 4.9e-11 72.4 124 39.5
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.4e-10 70.9 54 64.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.4e-10 68.9 195 34.4
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 7.3e-07 58.5 54 51.9


User provided reference genes

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