Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1679.8 845 100.0
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1188.3 817 75.3
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1185.2 817 75.2
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1153.3 819 72.3
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1141.3 840 71.2
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1137.9 817 70.4
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1127.9 823 71.2
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1125.9 828 70.4
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1122.5 852 68.2
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1120.9 824 70.1
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1119.0 819 70.6
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1118.6 817 70.0
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1118.2 882 66.2
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1114.0 818 70.4
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1111.3 819 70.3
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1110.9 820 70.2
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1106.3 824 69.7
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1104.0 819 69.4
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1103.2 823 69.3
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1103.2 822 69.6
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1100.5 825 69.3
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1099.7 819 69.6
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1099.3 823 69.4
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1098.6 823 69.1
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1096.3 802 70.4
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1096.3 823 69.1
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1090.1 821 68.5
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1083.6 893 64.8
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1082.8 824 68.0
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1081.2 823 68.2
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1080.1 823 67.9
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1079.7 826 68.0
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1078.9 822 67.2
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1078.5 822 67.9
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1076.2 857 66.3
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1075.5 823 67.1
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 5.8e-312 1074.3 822 67.5
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 2.9e-311 1071.6 823 67.2
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 6.9e-311 1070.5 822 67.3
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 8.7e-311 1070.1 822 67.3
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 2.0e-310 1068.9 851 66.3
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 2.5e-310 1068.5 822 67.4
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 1.3e-309 1066.2 822 67.0
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 3.7e-309 1064.7 823 67.1
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 4.8e-309 1064.3 822 66.9
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 8.2e-309 1063.5 830 67.3
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 1.4e-308 1062.8 831 65.3
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.8e-308 1062.4 830 67.2
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 7.0e-308 1060.4 822 66.8
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 3.8e-306 1054.7 823 65.5
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 3.8e-306 1054.7 823 66.1
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.8e-306 1054.7 809 68.2
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 6.5e-306 1053.9 823 65.4
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 6.5e-306 1053.9 823 65.4
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 1.5e-305 1052.7 823 65.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 1.6e-304 1049.3 823 65.5
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 6.1e-304 1047.3 828 66.7
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 8.0e-304 1047.0 823 64.9
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 8.0e-304 1047.0 850 65.4
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 8.0e-304 1047.0 819 66.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 1.0e-303 1046.6 830 65.8
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 1.0e-303 1046.6 819 65.7
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 3.0e-303 1045.0 830 65.9
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 4.0e-303 1044.6 825 65.9
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 1.2e-302 1043.1 823 65.1
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 4.4e-302 1041.2 823 65.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 9.8e-302 1040.0 825 66.9
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 9.8e-302 1040.0 830 65.4
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 1.3e-301 1039.6 823 64.6
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 1.7e-301 1039.3 791 68.1
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 2.2e-301 1038.9 823 64.5
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 2.2e-301 1038.9 823 64.6
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 2.8e-301 1038.5 823 64.5
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 3.7e-301 1038.1 823 64.3
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 3.7e-301 1038.1 725 74.1
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 4.8e-301 1037.7 823 64.6
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 1.4e-300 1036.2 822 65.6
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 4.5e-299 1031.2 831 64.7
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 1.3e-298 1029.6 823 64.5
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 1.7e-298 1029.2 819 65.4
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 2.9e-298 1028.5 822 65.2
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 1.5e-294 1016.1 822 63.4
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 5.7e-294 1014.2 838 62.9
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.3e-293 1013.1 779 68.2
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 1.2e-291 1006.5 800 66.1
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 1.8e-284 982.6 821 63.1
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 8.6e-282 973.8 768 64.5
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 2.1e-280 969.1 826 59.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 3.6e-280 968.4 823 62.6
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.9e-276 956.1 823 63.5
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 1.7e-274 949.5 725 67.9
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 5.8e-270 934.5 778 62.2
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 9.6e-257 890.6 771 61.6
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 2.7e-251 872.5 831 54.8
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 2.4e-244 849.4 823 55.7
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 2.5e-241 839.3 820 55.1
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 4.9e-237 825.1 823 54.7
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.0e-226 790.8 830 51.4
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 1.1e-217 760.8 776 52.1
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 4.1e-207 725.7 587 66.3
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.6e-190 670.6 694 49.9
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 2.6e-177 626.7 831 40.9
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.2e-174 617.8 816 41.8
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.2e-168 597.0 815 40.7
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.3e-165 587.8 339 82.3
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.5e-164 584.3 339 82.6
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 2.8e-163 580.1 341 80.4
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.8e-163 580.1 830 39.3
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 6.4e-160 568.9 567 56.8
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.1e-156 558.1 807 39.5
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 4.7e-155 552.7 822 39.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 5.8e-153 545.8 771 43.8
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 4.4e-145 519.6 358 73.5
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 1.7e-133 481.1 306 76.5
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 4.5e-129 466.5 264 85.6
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.9e-112 410.6 474 48.9
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.9e-111 407.9 240 81.7
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 2.7e-110 404.1 550 46.7
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.5e-110 403.7 235 81.7
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.0e-109 402.1 235 80.9
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.2e-105 388.7 280 71.4
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.0e-101 375.6 359 57.4
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.4e-85 322.0 222 71.2
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 6.7e-85 319.7 249 67.1
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 4.7e-70 270.4 837 27.0
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.7e-65 254.6 144 86.8
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-51 207.2 395 32.9
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.4e-50 205.7 130 76.2
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 9.2e-50 203.0 143 67.8
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 6.2e-46 190.3 129 77.5
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 2.0e-44 185.3 133 69.2
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 3.4e-44 184.5 915 24.3
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 8.1e-38 163.3 132 56.1
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.7e-32 145.6 92 72.8
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 6.6e-32 143.7 88 77.3
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 1.4e-29 136.0 91 72.5
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 4.0e-29 134.4 188 38.8
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 2.8e-22 111.7 77 74.0
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.2e-17 96.3 73 63.0
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 3.5e-17 94.7 75 60.0
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 7.9e-17 93.6 123 43.1
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 2.3e-16 92.0 81 54.3
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 2.5e-15 88.6 58 74.1
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 4.3e-15 87.8 59 69.5
PGSC0003DMG400034956 Solanum tuberosum HOM05D005093 ORTHO05D002107 3.3e-07 61.6 35 71.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 7.4e-07 60.5 218 31.2
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 9.6e-07 60.1 47 55.3


User provided reference genes

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