Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.2e-91 339.7 166 100.0
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.4e-42 176.8 165 58.2
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-41 171.0 173 57.8
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 8.4e-40 167.5 173 56.6
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 1.2e-38 163.7 167 55.7
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.6e-38 163.3 174 55.7
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.7e-38 162.5 165 55.8
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 6.0e-38 161.4 165 60.0
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.3e-37 160.2 167 55.7
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 3.9e-37 158.7 164 56.1
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 6.7e-37 157.9 169 54.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 3.3e-36 155.6 165 53.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 7.4e-36 154.5 166 53.6
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 9.6e-36 154.1 168 53.6
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 4.8e-35 151.8 165 54.5
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 6.2e-35 151.4 166 54.2
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 8.1e-35 151.0 172 51.2
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.4e-34 150.2 167 50.3
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.4e-34 149.4 166 54.8
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.0e-34 148.7 166 52.4
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.3e-32 143.7 172 48.3
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.3e-32 143.7 164 53.0
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.3e-32 143.7 89 77.5
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.3e-32 143.7 166 50.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.2e-32 142.9 98 72.4
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 2.9e-32 142.5 105 67.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 3.8e-32 142.1 167 53.3
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 8.4e-32 141.0 169 47.9
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.1e-31 140.6 167 53.3
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-31 140.6 167 53.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-31 140.6 167 53.3
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.4e-31 140.2 165 49.7
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 4.2e-31 138.7 169 50.3
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.2e-31 138.7 121 58.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.1e-31 137.9 164 51.8
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-30 137.1 167 52.7
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 2.7e-30 136.0 168 48.2
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 6.0e-30 134.8 82 75.6
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 7.9e-30 134.4 164 48.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.0e-29 134.0 103 65.0
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.3e-29 133.7 177 49.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 5.1e-29 131.7 106 59.4
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-28 130.6 149 53.0
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-28 130.2 191 48.2
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.5e-28 130.2 76 77.6
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.5e-28 130.2 76 77.6
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.5e-28 130.2 96 65.6
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.5e-28 129.4 165 47.3
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-28 129.0 97 68.0
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 4.3e-28 128.6 168 47.6
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 5.7e-28 128.3 168 47.6
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 5.7e-28 128.3 104 65.4
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 5.7e-28 128.3 165 48.5
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 9.6e-28 127.5 105 61.0
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 9.6e-28 127.5 117 59.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.3e-27 127.1 76 76.3
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.3e-27 127.1 76 76.3
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.6e-27 126.7 112 56.2
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.6e-27 126.7 107 57.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.8e-27 125.9 165 48.5
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.8e-26 123.2 142 50.7
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.4e-26 122.9 167 41.9
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 6.9e-26 121.3 104 56.7
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.2e-25 120.6 150 48.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.6e-25 119.4 96 61.5
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 2.6e-25 119.4 96 61.5
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-25 119.4 73 75.3
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 3.4e-25 119.0 148 47.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 3.4e-25 119.0 106 57.5
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 4.5e-25 118.6 106 57.5
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 5.8e-25 118.2 105 57.1
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.8e-25 118.2 153 47.7
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 7.6e-25 117.9 76 69.7
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 7.6e-25 117.9 76 72.4
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.0e-24 117.5 96 59.4
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.0e-24 117.5 96 59.4
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.0e-24 117.5 170 46.5
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.7e-24 116.7 120 50.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.7e-24 116.7 73 69.9
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 3.8e-24 115.5 83 69.9
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.8e-24 115.5 101 59.4
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 5.0e-24 115.2 122 50.8
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 6.5e-24 114.8 126 50.0
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 6.5e-24 114.8 77 68.8
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.1e-23 114.0 166 42.2
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.1e-23 114.0 74 70.3
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.4e-23 113.6 101 56.4
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.5e-23 112.8 97 58.8
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 3.2e-23 112.5 166 44.0
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.2e-22 110.5 119 50.4
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.2e-22 110.5 60 88.3
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.1e-22 109.8 98 58.2
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 3.5e-22 109.0 71 70.4
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 6.1e-22 108.2 74 68.9
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 6.1e-22 108.2 106 50.0
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.8e-21 106.7 96 59.4
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.8e-21 106.7 74 68.9
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.9e-21 105.5 168 42.9
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.1e-21 105.1 101 53.5
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.1e-20 104.0 77 66.2
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.3e-20 102.4 58 82.8
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 5.7e-20 101.7 167 42.5
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 7.4e-20 101.3 166 41.0
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 2.8e-19 99.4 108 52.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 6.9e-18 94.7 106 50.9
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 9.0e-18 94.4 63 73.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.0e-17 93.2 59 76.3
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.4e-17 92.4 164 39.0
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 7.7e-17 91.3 167 39.5
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 3.8e-16 89.0 163 38.0
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.5e-16 88.2 105 49.5
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.1e-14 83.2 96 44.8
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.6e-14 82.0 74 51.4
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.0e-13 80.9 76 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 3.3e-12 75.9 69 53.6
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 2.4e-10 69.7 69 46.4
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 5.3e-10 68.6 72 45.8
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.0e-08 64.3 154 34.4
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 60.8 69 40.6
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.4e-07 60.5 106 37.7
Cc02_g09780 Coffea canephora HOM05D005062 ORTHO05D153758 5.5e-07 58.5 106 39.6


User provided reference genes

Program Settings