Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 0.0e+00 1985.3 1078 100.0
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1122.8 989 62.9
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1115.1 1142 57.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 3.7e-306 1055.0 1161 54.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 3.2e-305 1052.0 1152 53.8
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 8.6e-303 1043.9 1177 53.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.7e-293 1011.5 1017 57.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.2e-288 996.9 1132 52.8
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.7e-282 976.5 1003 56.5
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 9.3e-281 970.7 1232 52.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 9.3e-281 970.7 1166 51.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.7e-279 966.5 1142 51.8
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 1.8e-276 956.4 1147 51.4
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 2.4e-276 956.1 1123 52.4
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 2.0e-275 953.0 1160 51.0
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.6e-272 943.3 1149 50.7
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 3.5e-272 942.2 1011 55.1
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 4.6e-272 941.8 995 54.9
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 2.3e-271 939.5 1020 54.8
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 3.9e-271 938.7 1144 50.9
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 3.7e-269 932.2 1232 49.5
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.5e-267 926.8 1136 52.4
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 2.9e-266 922.5 998 54.5
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.6e-264 916.8 1201 47.4
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 7.9e-264 914.4 1152 49.3
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 7.9e-264 914.4 1131 50.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.5e-262 910.2 1245 48.1
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.9e-262 909.8 1009 52.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.3e-262 909.1 1196 47.2
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 4.3e-262 908.7 1172 49.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.8e-261 906.0 1154 49.0
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 4.8e-261 905.2 1151 49.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 8.2e-261 904.4 832 58.2
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.9e-260 901.4 1165 48.6
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 2.0e-259 899.8 1327 44.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.4e-259 899.0 892 57.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 5.9e-259 898.3 985 52.8
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 5.0e-258 895.2 1016 52.3
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.6e-256 888.6 958 53.1
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 6.1e-256 888.3 992 52.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.0e-255 887.5 1150 49.0
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-255 886.7 989 52.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.8e-255 886.7 1180 48.8
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 7.4e-254 881.3 1017 52.3
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 9.7e-254 880.9 1195 46.0
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.1e-252 877.5 1144 50.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.9e-251 871.7 1037 51.6
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.6e-248 863.6 975 52.3
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.8e-247 860.1 1195 48.6
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.1e-246 857.4 1145 50.6
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 4.4e-246 855.5 990 51.4
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 4.4e-246 855.5 1020 50.6
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 5.7e-246 855.1 1006 50.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 4.8e-245 852.0 1024 50.8
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 6.3e-245 851.7 1143 47.2
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 3.1e-244 849.4 1145 47.3
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 5.3e-244 848.6 1046 49.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 9.1e-244 847.8 1145 47.9
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.7e-240 836.3 1114 47.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.9e-240 834.7 1205 46.7
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.9e-239 832.4 1199 45.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.6e-235 819.7 1020 48.9
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 4.5e-235 818.9 1126 46.8
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 3.2e-233 812.8 1013 49.6
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 6.1e-232 808.5 1154 45.0
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.0e-231 805.8 1147 45.3
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 5.2e-231 805.4 1129 45.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.0e-230 803.5 1209 43.9
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 2.6e-230 803.1 1117 45.3
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 3.3e-230 802.7 844 54.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 3.2e-225 786.2 1298 41.8
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 7.2e-225 785.0 1124 45.4
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 3.6e-224 782.7 1113 45.3
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 1.0e-223 781.2 974 48.6
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 2.0e-222 776.9 1117 45.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 3.4e-222 776.2 982 48.4
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 7.5e-222 775.0 1140 44.6
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.7e-221 773.9 1129 44.8
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.1e-220 769.6 1129 44.9
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 9.1e-220 768.1 972 48.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 6.5e-218 761.9 796 54.4
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 6.5e-218 761.9 972 48.6
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.9e-217 760.4 1119 44.1
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.6e-216 757.3 1123 44.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 2.3e-215 753.4 1124 44.4
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.0e-214 750.4 1122 44.2
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.6e-214 750.0 1122 44.2
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.6e-214 750.0 1122 44.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 3.1e-212 743.0 1144 43.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.2e-208 731.1 948 47.8
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 2.1e-208 730.3 1125 43.6
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.7e-208 729.2 823 51.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.4e-207 727.6 1234 40.4
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.0e-199 701.4 976 45.4
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.9e-196 690.6 996 43.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 2.5e-193 680.2 975 44.5
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.6e-190 670.2 1049 43.1
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 4.4e-190 669.5 995 44.1
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.9e-189 666.8 1094 41.1
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 7.8e-187 658.7 880 45.5
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.3e-170 604.0 414 74.6
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 4.8e-160 569.7 1048 38.5
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.5e-145 520.8 374 70.9
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 7.2e-140 502.7 384 66.7
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.0e-133 482.3 1092 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.6e-126 457.6 833 37.6
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 5.3e-111 406.8 1005 32.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.4e-103 382.1 850 32.9
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 9.5e-100 369.4 519 44.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.4e-97 360.9 746 40.1
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.9e-77 294.3 787 28.7
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.9e-72 278.1 295 54.2
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.4e-56 223.8 172 64.5
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 4.3e-52 211.1 178 64.0
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.4e-34 152.9 104 72.1
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.5e-30 138.3 110 60.9
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.8e-29 136.0 121 59.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 6.7e-29 134.0 321 34.3
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.5e-20 106.3 497 25.8
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.8e-19 101.3 430 30.5
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.7e-14 85.5 109 50.5
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.5e-12 79.7 70 54.3
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.7e-11 75.1 70 54.3
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 6.3e-11 74.3 162 34.0
HanXRQChr01g0002611 Helianthus annuus HOM05D005400 ORTHO05D006668 1.2e-09 70.1 107 44.9
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 2.9e-08 65.5 38 78.9
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 8.5e-08 63.9 77 45.5
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 9.4e-07 60.5 70 52.9
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 1.2e-06 60.1 46 58.7


User provided reference genes

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