Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 2081.2 1049 100.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1527.3 1115 71.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1453.3 1120 68.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1442.2 1126 67.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1440.6 1132 67.4
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1432.9 1122 66.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1425.2 1105 66.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1417.9 1122 66.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1410.6 1154 66.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1408.3 1105 66.2
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1406.3 1126 66.1
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1403.3 1113 65.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1399.8 1116 65.1
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1398.6 1115 65.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 1061 69.2
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1394.4 1105 65.2
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1393.6 1134 64.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1392.5 1133 65.0
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1391.7 1119 65.1
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1388.2 1120 64.6
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1382.1 1183 62.1
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1379.8 1105 64.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1376.7 1116 65.2
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1370.9 1054 65.9
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1365.9 1112 64.2
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1363.2 1119 64.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 1120 63.3
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1353.6 1166 61.8
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1346.6 1123 64.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1345.1 1126 63.5
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1343.9 1155 61.7
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1336.6 1117 62.5
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1336.6 1066 64.6
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1333.2 1121 62.8
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1333.2 1118 62.2
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1327.8 1117 63.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 1120 63.5
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1319.3 1122 61.7
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1315.8 1116 62.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1314.7 1109 62.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1312.4 1121 60.4
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1307.7 1182 59.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1307.4 1126 60.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 1122 60.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1303.5 1144 60.3
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1303.5 1116 61.2
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1303.1 1121 61.4
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1165 58.7
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1121 59.9
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1117 61.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1295.4 1131 60.1
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1294.3 1122 60.2
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1288.9 1117 60.8
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1113 60.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 1124 60.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1284.2 1117 60.7
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1282.3 1117 60.5
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1281.5 1121 59.6
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1280.8 922 71.4
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1113 62.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1276.2 1113 62.2
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1275.0 1117 60.2
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1270.0 1138 58.6
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1267.7 1104 60.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1117 60.1
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1259.2 1065 63.8
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1245.3 1134 58.3
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1244.6 1196 56.9
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1115 59.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1241.1 1126 57.0
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 1126 57.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1231.9 1089 60.6
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1230.7 1100 60.4
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1225.3 1189 56.9
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1083 60.5
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1098 59.3
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1098 59.3
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1219.5 1092 59.6
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1098 58.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1217.2 1100 59.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1214.1 1090 59.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1213.7 1098 58.3
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1212.6 1101 59.1
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1211.8 1093 59.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1208.4 793 76.3
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1205.3 987 63.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1136 58.4
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1193.3 1089 58.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1192.9 1088 58.8
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1175.6 1091 57.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1169.8 1093 57.6
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1168.7 1102 57.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1161.0 1096 57.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1159.4 1108 56.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1158.3 960 63.9
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1154.8 999 61.5
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1148.7 960 63.6
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1135.9 1004 62.4
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1134.0 1115 55.3
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1124.0 1117 55.0
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1112.4 755 72.3
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1110.9 843 65.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1090.1 903 63.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1076.2 963 59.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1075.1 1124 51.8
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 9.3e-302 1040.4 960 60.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.8e-292 1009.6 1083 51.4
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 4.5e-288 995.0 1148 48.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.7e-282 975.3 962 55.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.1e-277 958.0 645 72.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-257 893.6 1121 45.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 4.0e-244 849.0 1048 45.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 5.2e-244 848.6 1008 47.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-241 840.5 1139 43.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.6e-240 837.0 802 57.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 5.8e-211 738.8 821 49.5
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-188 664.5 971 41.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.4e-188 663.7 1043 40.1
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.4e-172 610.5 403 75.7
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 6.7e-167 592.4 1064 37.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.0e-155 554.3 459 59.0
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.2e-145 520.0 532 52.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.6e-120 437.2 331 64.7
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.0e-106 391.0 322 59.9
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.6e-104 384.0 1112 28.1
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-87 328.6 464 45.7
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.8e-79 302.0 228 65.8
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 5.3e-71 273.9 381 42.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.9e-66 257.7 255 55.3
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.6e-65 253.8 258 54.3
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.1e-63 249.6 235 60.9
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.6e-59 234.2 190 66.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.5e-57 228.4 210 58.1
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.3e-55 220.7 224 54.5
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.5e-52 211.8 379 38.5
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-50 204.5 175 62.3
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-50 204.5 175 62.3
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-50 204.5 175 62.3
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-49 202.6 175 61.7
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.3e-49 201.4 175 61.7
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 9.0e-47 193.4 357 35.0
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.5e-44 185.3 244 45.5
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.9e-42 177.9 143 63.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.2e-40 170.2 175 56.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 4.5e-30 137.9 393 30.8
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 7.2e-28 130.6 213 42.3
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 9.4e-28 130.2 215 41.4
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 1.2e-27 129.8 214 43.5
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.3e-26 125.6 77 77.9
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.8e-24 118.6 130 51.5
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.3e-23 114.4 103 58.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.2e-20 105.1 300 29.0
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.2e-20 104.0 81 59.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.7e-19 101.3 243 30.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.0e-18 98.2 73 63.0
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 8.3e-16 90.5 58 65.5
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 3.1e-15 88.6 54 75.9


User provided reference genes

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