Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 7.9e-200 700.3 366 100.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.8e-158 560.5 407 74.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.4e-156 554.7 407 73.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.3e-154 549.3 382 75.1
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 7.3e-153 544.3 407 70.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.7e-152 541.6 408 71.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.7e-152 541.6 334 85.3
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.6e-150 535.8 412 71.1
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-148 530.4 412 70.9
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.4e-148 530.0 407 71.0
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.9e-148 529.6 412 70.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.4e-148 528.1 412 70.6
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 5.4e-148 528.1 407 69.5
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.2e-148 527.3 412 70.4
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.1e-147 526.2 402 71.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 6.0e-147 524.6 402 69.7
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-146 523.9 412 70.4
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.3e-146 523.5 334 80.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.3e-146 522.7 402 70.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-145 520.4 408 68.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-145 520.4 408 68.6
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.3e-145 518.8 410 69.3
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.3e-145 518.8 410 69.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 4.3e-145 518.5 341 78.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 7.3e-145 517.7 335 79.7
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 7.3e-145 517.7 411 68.9
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 9.5e-145 517.3 402 69.4
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 4.7e-144 515.0 407 69.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 8.9e-143 510.8 403 69.0
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.5e-142 510.0 338 79.9
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-142 509.6 338 79.9
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 4.4e-142 508.4 334 76.9
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 7.6e-142 507.7 407 66.8
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 9.9e-142 507.3 334 79.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.2e-141 506.1 334 78.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.9e-141 505.8 408 68.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 3.7e-141 505.4 334 77.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.1e-140 503.8 334 78.7
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-140 502.7 334 77.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.2e-140 502.3 334 78.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.2e-140 502.3 334 78.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.2e-140 500.7 334 76.9
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 9.2e-140 500.7 334 76.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.7e-139 499.2 410 67.6
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.7e-139 499.2 442 61.1
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.5e-139 498.8 334 77.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.3e-138 496.9 333 76.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.7e-138 496.5 455 61.8
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.7e-138 496.5 335 79.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.7e-138 496.5 340 77.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 3.9e-138 495.4 334 76.9
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 5.1e-138 495.0 335 75.8
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 8.6e-138 494.2 338 79.3
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.9e-137 493.0 334 75.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.9e-137 493.0 334 76.6
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 2.5e-137 492.7 331 75.2
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 2.5e-137 492.7 334 75.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.5e-137 492.7 333 77.5
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 7.3e-137 491.1 334 76.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.6e-136 490.0 334 76.0
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.1e-136 489.6 334 76.9
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.8e-136 489.2 334 77.2
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.2e-136 488.0 333 75.4
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.1e-136 487.6 403 65.5
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.4e-135 486.9 334 74.0
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.4e-135 486.9 334 75.4
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.8e-135 486.5 407 67.8
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.8e-135 486.5 335 76.4
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.4e-135 486.1 402 66.9
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 3.1e-135 485.7 334 76.3
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.0e-134 483.0 334 74.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 4.4e-134 481.9 403 65.5
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.7e-133 479.9 334 74.3
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.8e-133 478.8 405 64.7
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-132 476.1 397 65.2
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.2e-132 475.7 334 75.4
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 9.3e-132 474.2 334 75.7
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.6e-131 473.4 334 75.7
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 4.6e-131 471.9 334 74.3
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-129 466.8 335 73.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.5e-129 466.8 402 62.2
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.9e-129 466.5 334 73.1
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.9e-129 466.5 332 74.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 4.8e-128 461.8 334 72.5
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.4e-127 460.3 334 71.3
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.4e-127 460.3 335 75.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.8e-127 459.9 334 72.2
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.8e-127 459.9 379 64.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 5.3e-127 458.4 334 71.9
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 6.9e-127 458.0 334 70.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 9.0e-127 457.6 340 71.8
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.2e-126 457.2 382 67.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.5e-126 456.8 334 71.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.4e-126 455.7 334 71.6
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.4e-126 455.7 334 71.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 9.9e-126 454.1 334 71.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.7e-125 453.4 334 71.3
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.7e-125 453.4 335 71.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.9e-125 452.6 334 70.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 3.8e-125 452.2 334 71.0
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.1e-124 450.7 364 67.3
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.4e-124 450.3 335 71.6
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.9e-124 449.9 334 68.6
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.2e-124 449.1 297 78.8
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.2e-124 448.7 334 68.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.3e-124 447.6 334 70.7
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 9.3e-124 447.6 334 70.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-123 446.8 342 70.8
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-122 444.1 336 70.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.9e-122 442.2 334 67.1
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.3e-120 437.2 334 68.0
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.1e-119 434.1 334 67.7
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.4e-119 433.7 334 69.8
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 2.0e-118 429.9 334 69.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 7.6e-118 427.9 345 70.4
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.9e-117 425.2 334 68.3
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.4e-116 423.7 360 61.7
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 6.7e-114 414.8 339 63.7
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.8e-111 406.8 334 62.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.0e-111 404.4 445 55.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-106 391.0 301 69.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.0e-103 377.9 334 60.2
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-101 374.4 446 50.2
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.0e-101 374.4 344 60.8
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.1e-97 360.9 407 51.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.6e-96 357.1 436 51.6
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 8.2e-88 328.2 406 51.0
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.4e-86 322.8 409 47.2
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.4e-86 322.8 409 47.2
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.7e-83 313.2 390 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 3.0e-82 309.7 334 53.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 4.1e-71 272.7 409 40.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.5e-65 254.2 378 47.6
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 4.5e-62 242.7 278 54.0
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.7e-53 214.2 360 39.7
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 6.6e-53 212.2 130 84.6
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.0e-45 186.8 330 41.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.7e-40 169.9 117 74.4
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.8e-35 153.7 271 41.0
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.3e-28 129.8 114 62.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.3e-28 129.0 146 53.4
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.0e-25 120.9 105 57.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.3e-21 107.5 95 61.1
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-19 100.1 84 70.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.4e-17 93.6 71 71.8
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.9e-15 87.8 351 28.2
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-12 78.6 329 26.4
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.9e-12 77.8 117 47.9
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.3e-11 75.1 55 70.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.2e-07 60.5 223 28.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 9.3e-07 58.9 87 42.5


User provided reference genes

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